CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95597	Soybean	nucleus	89.82	91.05
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	17.37	67.44
KRH51416	Soybean	cytosol	17.22	66.86
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	17.22	66.86
KRH29120	Soybean	endoplasmic reticulum, nucleus	17.07	66.28
KRG97056	Soybean	cytosol	16.77	64.0
KRH68802	Soybean	cytosol	16.47	62.86
VIT_00s0179g00290.t01	Wine grape	endoplasmic reticulum, golgi	65.12	59.83
AT3G63400.4	Thale cress	nucleus	48.8	57.19
CDY53714	Canola	nucleus	46.86	56.3
KRG98290	Soybean	endoplasmic reticulum	17.07	55.88
Bra040447.1-P	Field mustard	nucleus	44.16	55.77
KRH30309	Soybean	endoplasmic reticulum	16.77	54.9
PGSC0003DMT400049782	Potato	nucleus	51.2	51.98
KRH13330	Soybean	endoplasmic reticulum, nucleus	14.07	51.93
Solyc09g065720.2.1	Tomato	nucleus	50.3	50.91
CDX93909	Canola	nucleus	45.96	50.16
KRH20677	Soybean	cytosol	13.32	48.63
KRH37809	Soybean	nucleus	14.07	48.45
KRG97736	Soybean	endoplasmic reticulum	16.62	47.23
KRH31143	Soybean	endoplasmic reticulum	16.62	46.64
GSMUA_Achr5P03050_001	Banana	nucleus	46.86	45.1
HORVU2Hr1G056230.1	Barley	nucleus	41.32	44.52
TraesCS2B01G260600.1	Wheat	nucleus	42.07	44.25
TraesCS2D01G244700.1	Wheat	nucleus	41.92	44.03
KRH60706	Soybean	endoplasmic reticulum	15.27	43.97
TraesCS2A01G237700.1	Wheat	nucleus	42.07	43.7
KRH29272	Soybean	endoplasmic reticulum	15.12	42.8
KRH24294	Soybean	endoplasmic reticulum	14.97	42.37
EER95944	Sorghum	nucleus	41.02	42.28
KRG93128	Soybean	nucleus, plastid	15.57	41.11
KRH36359	Soybean	nucleus, plastid	15.12	40.24
Zm00001d007826_P002	Maize	nucleus	40.27	40.15
KRH57738	Soybean	cytosol, nucleus	21.56	40.0
KRH04660	Soybean	cytosol, nucleus	21.26	39.44
Zm00001d018944_P004	Maize	nucleus	41.17	39.01
KRG96627	Soybean	nucleus, plastid	14.97	38.46
KRH50243	Soybean	cytosol	20.66	38.23
KRH71172	Soybean	cytosol	20.36	37.67
KRH33684	Soybean	nucleus, plastid	14.82	37.64
KRH68358	Soybean	plastid	12.28	34.75
KRH52477	Soybean	nucleus	43.11	33.88
KRH61803	Soybean	nucleus	42.66	33.81
KRH15996	Soybean	nucleus	35.18	27.68

Protein Annotations

EntrezGene:100807327	MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:ACUP02002049	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_03G157900	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
UniProt:I1JNY3	InterPro:IPR002130	InterPro:IPR029000	EnsemblPlants:KRH67275	ProteinID:KRH67275	ProteinID:KRH67275.1
PFAM:PF00160	PRINTS:PR00153	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF396	SUPFAM:SSF50891
UniParc:UPI000233A4A8	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:37332288..37338531

Molecular Weight (calculated)

74265.8 Da

IEP (calculated)

11.459

GRAVY (calculated)

-1.425

Length

668 amino acids

Sequence
(BLAST)

001: MGLEKNPRVF FDVSIDGDPV ERIVIQLFAS IVPRTAENFR ALCTGEKGIG ESTGKPLHYK GTSLHRIIRG FMAQGGDFSR GNGTGGESIY GGKFADENFK
101: LTHDGPGILS MANSGPNTNG SQFFITFKRQ PHLDGKHVVF GKVVNGIDIL KKIEQVGTSD GKPTQPVKII DCGEVSETKI QHTAEKEKGK RRKSGKSLSS
201: DDGSDKKSRG KRKKSSKDTR KRRRRYSTSD SDSYSSDSES DSDSESDSSV SDSSSSSDGK HQKRRRNKHK HGKKRKIGRK QRKRSQHGRT KKSRHKSRRS
301: SEDSSDTNSD SASGSSSSDE KADRHASGRK APADNKAQRN LDTGKQFSNP SCQRQTIPEQ TMDPKVRRIV DKQSHEEGEF SPENGAFVNN RHDTQAEFSK
401: PAKQHANSDD SNHNRGASPG RSPTRDSGEL NQGRALLLAS PGKKSPGQKA SEPPAPKHGQ GFSKSPSPNS MPKRIKKGRG FTERYAFARR YRTPSPERSP
501: PHSYRYGDRN IRRNFDRNTS YRSYSGRSPP RRFRSPPGGR NRPRYQSRRS RSRSISGSPV RGRFRERDRS RSPRRSPSPE DRLPLISDRL KSRLGPRSDE
601: GLRDRGRSRS RSKSRSKGSS HSRSPDATPP KRYDKRTSVP RSRSRSSSAS GQKGLVSYGD ASPDSGSR

Best Arabidopsis Sequence Match ( AT3G63400.1 )
(BLAST)

001: MTKKKNPNVF LDVSIGGDPV QRIVIELFAD VVPKTAENFR ALCTGEAGVG KSTGKPLHFK GSSFHRVIKG FMAQGGDFSN GNGTGGESIY GGKFSDENFR
101: LDHDGAGVLS MANCGPNTNG SQFFILFKRQ PHLDGKHVVF GKVVEGMAVI KKMELVGTSD GKPTSPVKII DCGETSQIRA HDAAEREKGK SKKSNKNFSP
201: GDVSDREAKE TRKKESNEKR IKRKRRYSSS DSYSSSSDSD SDSESEAYSS SSYESSSSSD GKHRKRKSTT RHKGRRGERK SKGRSGKKKA RPDRKPSTNS
301: SSDTESSSSS DDEKVGHKAI KSVKVDNADQ HANLDDSVKS RSRSPIRRRN QNSRSKSPSR SPVRVLGNGN RSPSRSPVRD LGNGSRSPRE KPTEETVGKS
401: FRSPSPSGVP KRIRKGRGFT ERYSFARKYH TPSPERSPPR HWPDRRNFQD RNRDRYPSNR SYSERSPRGR FRSPPRRRSP PRYNRRRRST SRSPDGYRRR
501: LRDGSRSQSP RHRSRSQSPR KRQPISQDLK SRLGPQRSPI RGGRTSPAES LSPSHSPSPP GKRGLVSYAD

Arabidopsis Description

CYP63Peptidyl-prolyl cis-trans isomerase CYP63 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.