Factsheet for PGSC0003DMT400049782

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065720.2.1	Tomato	nucleus	93.62	93.33
PGSC0003DMT400004125	Potato	extracellular	17.33	66.67
PGSC0003DMT400011344	Potato	cytosol	17.33	66.28
PGSC0003DMT400073838	Potato	cytosol	17.48	65.71
VIT_00s0179g00290.t01	Wine grape	endoplasmic reticulum, golgi	60.49	54.75
CDY53714	Canola	nucleus	46.05	54.5
Bra040447.1-P	Field mustard	nucleus	43.31	53.88
AT3G63400.4	Thale cress	nucleus	46.2	53.33
PGSC0003DMT400015869	Potato	cytosol	15.2	52.08
KRG95597	Soybean	nucleus	51.82	51.75
PGSC0003DMT400078234	Potato	endoplasmic reticulum	16.26	51.69
PGSC0003DMT400013826	Potato	cytosol, mitochondrion	14.89	51.58
KRH67275	Soybean	nucleus	51.98	51.2
CDX93909	Canola	nucleus	45.59	49.02
PGSC0003DMT400016955	Potato	endoplasmic reticulum	16.11	46.29
HORVU2Hr1G056230.1	Barley	nucleus	41.19	43.71
TraesCS2B01G260600.1	Wheat	nucleus	42.1	43.62
TraesCS2D01G244700.1	Wheat	nucleus	41.49	42.92
PGSC0003DMT400013412	Potato	extracellular, plastid	15.96	42.34
TraesCS2A01G237700.1	Wheat	nucleus	41.34	42.3
EER95944	Sorghum	nucleus	41.34	41.98
GSMUA_Achr5P03050_001	Banana	nucleus	43.77	41.5
Zm00001d007826_P002	Maize	nucleus	40.58	39.85
Zm00001d018944_P004	Maize	nucleus	41.64	38.87
PGSC0003DMT400066358	Potato	cytosol	19.91	36.19
PGSC0003DMT400026079	Potato	cytosol	18.54	33.8
PGSC0003DMT400059575	Potato	nucleus	28.72	27.08

Protein Annotations

EntrezGene:102604071	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
InterPro:IPR002130	InterPro:IPR029000	UniProt:M1BPB5	PFAM:PF00160	EnsemblPlantsGene:PGSC0003DMG400019339	PGSC:PGSC0003DMG400019339
EnsemblPlants:PGSC0003DMT400049782	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF396
SUPFAM:SSF50891	UniParc:UPI000294DF34	RefSeq:XP_006349731.1	SEG:seg	:	:

Description

Cyclophylin [Source:PGSC_GENE;Acc:PGSC0003DMG400019339]

Coordinates

chr9:+:48601718..48609032

Molecular Weight (calculated)

72641.2 Da

IEP (calculated)

11.385

GRAVY (calculated)

-1.384

Length

658 amino acids

Sequence
(BLAST)

001: MSKKKNPLVF LDVSIDGDTA EKIVIELFAD TVPRTAENFR SLCTGEKGVG VSTGKPLHYK GCLFHRVIKG FMAQGGDFSK GNGTGGESIY GGKFPDENFK
101: VAHTEAGLLS MANSGPNTNG SQFFIIFKRT PHLDGKHVVF GKVVKGMDLV KKIEQLGTDS GKPSGLVKIV DCGEMSEKKS NDTSKAEKGK NKKSARALSS
201: DDDSDSQEKG KRKSSTNRKK KKKRRYSSSD SYSSETDTDS SSDSDSDSKL DSYSSSSSGD ERRKKRKRST KKESSRHGKK KGRKSTSRKV HRNKRSRRKR
301: SSESSSDTDS QSMSSSSDSS DDENGRPNIS AQKGLVKKSS NPVKEQAVLK QQQNLEEGEI SKNGKLPNNG HGGDVQTDRT LATNHQSDNS GRSRSATPSP
401: KGKPRPSRRS SQSMSPEKVP ARLGQNGGSL QIESKEKSLS KSPSPKATQP SRSSPGRDLS RNRSPDGTLK RVRKGRGFTD RYSFARRYRT PSPERSSYRP
501: YNQGGRNFQG NRDRYSSYRS YSGRSPQGRY RRSPRGRSPP RYQRRSRSRS VSHSPRRESR RSRSPSRSPS PREKRQTISD RLKSRLGPRV DDQHSIPTRR
601: SASRSRSRDS TTPRSPAAAP RKHSGKVGSA SPNSSRSTSP PRQRGLVSYE DISPTGTN

Best Arabidopsis Sequence Match ( AT3G63400.1 )
(BLAST)

001: MTKKKNPNVF LDVSIGGDPV QRIVIELFAD VVPKTAENFR ALCTGEAGVG KSTGKPLHFK GSSFHRVIKG FMAQGGDFSN GNGTGGESIY GGKFSDENFR
101: LDHDGAGVLS MANCGPNTNG SQFFILFKRQ PHLDGKHVVF GKVVEGMAVI KKMELVGTSD GKPTSPVKII DCGETSQIRA HDAAEREKGK SKKSNKNFSP
201: GDVSDREAKE TRKKESNEKR IKRKRRYSSS DSYSSSSDSD SDSESEAYSS SSYESSSSSD GKHRKRKSTT RHKGRRGERK SKGRSGKKKA RPDRKPSTNS
301: SSDTESSSSS DDEKVGHKAI KSVKVDNADQ HANLDDSVKS RSRSPIRRRN QNSRSKSPSR SPVRVLGNGN RSPSRSPVRD LGNGSRSPRE KPTEETVGKS
401: FRSPSPSGVP KRIRKGRGFT ERYSFARKYH TPSPERSPPR HWPDRRNFQD RNRDRYPSNR SYSERSPRGR FRSPPRRRSP PRYNRRRRST SRSPDGYRRR
501: LRDGSRSQSP RHRSRSQSPR KRQPISQDLK SRLGPQRSPI RGGRTSPAES LSPSHSPSPP GKRGLVSYAD

Arabidopsis Description

CYP63Peptidyl-prolyl cis-trans isomerase CYP63 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.