Factsheet for PGSC0003DMT400013826

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096520.2.1	Tomato	cytosol, nucleus, plastid	99.47	99.47
VIT_13s0084g00620.t01	Wine grape	cytosol	83.16	83.6
KRH13330	Soybean	endoplasmic reticulum, nucleus	79.47	83.43
KRH37809	Soybean	nucleus	83.68	81.96
TraesCS5A01G467000.1	Wheat	golgi, unclear	82.63	79.29
TraesCS5B01G478800.1	Wheat	plastid	82.63	79.29
TraesCS5D01G479900.1	Wheat	nucleus	82.11	78.79
HORVU5Hr1G111410.1	Barley	plastid	82.11	78.79
KRH20677	Soybean	cytosol	75.79	78.69
CDX91486	Canola	cytosol	82.63	78.5
AT2G38730.1	Thale cress	cytosol	82.11	78.39
EER90660	Sorghum	plastid	82.63	78.11
Bra005088.1-P	Field mustard	plastid	83.16	77.45
CDX74892	Canola	cytosol, plastid	82.63	76.96
CDX93307	Canola	plastid	82.63	76.59
Bra017105.1-P	Field mustard	plastid	83.16	76.33
GSMUA_Achr2P00020_001	Banana	plastid	83.68	76.08
Os03t0811600-01	Rice	nucleus, plastid	81.58	75.98
CDY18371	Canola	cytosol, plastid	82.63	75.85
PGSC0003DMT400011344	Potato	cytosol	56.84	62.79
PGSC0003DMT400004125	Potato	extracellular	55.79	61.99
PGSC0003DMT400073838	Potato	cytosol	52.11	56.57
PGSC0003DMT400078234	Potato	endoplasmic reticulum	49.47	45.41
Zm00001d013010_P002	Maize	plastid	70.53	43.51
PGSC0003DMT400015869	Potato	cytosol	43.16	42.71
PGSC0003DMT400016955	Potato	endoplasmic reticulum	50.53	41.92
PGSC0003DMT400013412	Potato	extracellular, plastid	49.47	37.9
PGSC0003DMT400066358	Potato	cytosol	50.0	26.24
PGSC0003DMT400026079	Potato	cytosol	47.37	24.93
PGSC0003DMT400049782	Potato	nucleus	51.58	14.89
PGSC0003DMT400059575	Potato	nucleus	13.16	3.58

Protein Annotations

EntrezGene:102586272	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005829	GO:GO:0005886
GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	UniProt:M1A3D4	PFAM:PF00160
EnsemblPlantsGene:PGSC0003DMG400005406	PGSC:PGSC0003DMG400005406	EnsemblPlants:PGSC0003DMT400013826	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF58	SUPFAM:SSF50891	UniParc:UPI000296BD4A	RefSeq:XP_006347668.1
SEG:seg	:	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400005406]

Coordinates

chr1:+:74248374..74253574

Molecular Weight (calculated)

20497.9 Da

IEP (calculated)

8.216

GRAVY (calculated)

-0.026

Length

190 amino acids

Sequence
(BLAST)

001: MASGGVGGGV VEWHLRPQVP KNPVVFFDVT IGNIPAGRIK MELFADITPK TAENFRQLCT GEFRKAGVPQ GFKNCQFHRV IKDFMIQGGD FLKGDGSGCV
101: SIYGSKFEDE NFIAKHTGPG LLSMANSGPN TNGCQFFVSC AKCEWLDNKH VVFGRVVGDG LLVVRKIENV AVGANNKPKL ACVIAECGEM

Best Arabidopsis Sequence Match ( AT2G38730.1 )
(BLAST)

001: MNSGGGIVAA AAPSSGGGNV EWHVRPPNPK NPVVFFDVSI GGIPAGRIKM ELFADIAPKT AENFRQFCTG ELRKAGKPLG YKECQFHRVI KDFMVQSGDF
101: LKNDGSGCMS IYGHKFEDEN FTAKHTGPGL LSMANSGPNT NGCQFFITCA KCDWLDNKHV VFGRVLGDGL LVMRKIENVA IGPNNRPKLA VVITECGEM

Arabidopsis Description

CYP22Peptidyl-prolyl cis-trans isomerase CYP22 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.