Factsheet for PGSC0003DMT400004125

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

cytosol: 22313117
extracellular: 22313117
extracellular: 22902798

msms PMID: 22902798 doi

MB Fernández, MR Pagano, GR Daleo, MG Guevara

Instituto de Investigaciones Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, CC 1245, 7600 Mar del Plata, Argentina. Electronic address: mbfernan@mdp.edu.ar.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111170.2.1	Tomato	extracellular, nucleus	96.49	96.49
PGSC0003DMT400011344	Potato	cytosol	91.81	91.28
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	87.13	86.63
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	86.55	86.05
KRH51416	Soybean	cytosol	85.96	85.47
KRH29120	Soybean	endoplasmic reticulum, nucleus	85.38	84.88
VIT_18s0001g14400.t01	Wine grape	extracellular	83.63	83.14
GSMUA_Achr3P12630_001	Banana	plasma membrane, unclear	73.1	82.78
VIT_03s0038g01930.t01	Wine grape	cytosol	83.04	82.56
Bra010728.1-P	Field mustard	cytosol	82.46	81.98
CDX90292	Canola	cytosol	82.46	81.98
CDY12100	Canola	cytosol	82.46	81.98
Zm00001d050635_P001	Maize	plastid	81.29	81.29
AT4G38740.1	Thale cress	cytosol	81.29	80.81
Zm00001d016661_P001	Maize	plastid	80.7	80.23
Zm00001d016660_P001	Maize	cytosol	80.7	80.23
Bra033574.1-P	Field mustard	cytosol	80.7	80.23
CDX72741	Canola	cytosol	80.7	80.23
CDY22414	Canola	cytosol, extracellular	80.7	80.23
TraesCS6D01G066700.1	Wheat	golgi, plastid	80.12	80.12
TraesCS6B01G093100.2	Wheat	cytosol	80.12	80.12
TraesCS6A01G068900.1	Wheat	cytosol	80.12	80.12
EES05164	Sorghum	cytosol	80.12	79.65
EES04388	Sorghum	cytosol	79.53	79.53
AT2G21130.1	Thale cress	cytosol	79.53	78.16
Os02t0121300-01	Rice	extracellular	77.78	77.33
TraesCS6A01G405900.1	Wheat	cytosol	72.51	74.25
PGSC0003DMT400073838	Potato	cytosol	71.93	70.29
HORVU6Hr1G092950.1	Barley	endoplasmic reticulum, golgi	73.1	66.14
HORVU6Hr1G012570.2	Barley	cytosol	78.95	65.53
PGSC0003DMT400078234	Potato	endoplasmic reticulum	67.84	56.04
PGSC0003DMT400013826	Potato	cytosol, mitochondrion	61.99	55.79
TraesCS6B01G450300.1	Wheat	cytosol	70.76	55.25
TraesCS6B01G450400.1	Wheat	cytosol	67.25	52.51
TraesCS6A01G405800.1	Wheat	cytosol	74.85	51.82
PGSC0003DMT400016955	Potato	endoplasmic reticulum	66.08	49.34
PGSC0003DMT400015869	Potato	cytosol	52.63	46.88
PGSC0003DMT400013412	Potato	extracellular, plastid	63.16	43.55
PGSC0003DMT400066358	Potato	cytosol	59.65	28.18
PGSC0003DMT400026079	Potato	cytosol	59.06	27.98
PGSC0003DMT400049782	Potato	nucleus	66.67	17.33
PGSC0003DMT400059575	Potato	nucleus	14.62	3.58

Protein Annotations

EntrezGene:102586427	MapMan:18.12.1	Gene3D:2.40.100.10	ProteinID:AAD22975	ProteinID:AAD22975.1	ProteinID:AAX84975
ProteinID:AAX84975.1	ProteinID:ABB29940	ProteinID:ABB29940.1	EMBL:AF126551	ProteinID:AFW90623	ProteinID:AFW90623.1
EMBL:AY972080	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EMBL:DQ235183
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130
InterPro:IPR029000	EMBL:JX576267	RefSeq:NP_001275605.1	PFAM:PF00160	EnsemblPlantsGene:PGSC0003DMG400001630	PGSC:PGSC0003DMG400001630
EnsemblPlants:PGSC0003DMT400004125	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF382	UniProt:Q9XF12	SUPFAM:SSF50891	UniParc:UPI00000A0630	SEG:seg	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400001630]

Coordinates

chr1:+:87214582..87215743

Molecular Weight (calculated)

17926.6 Da

IEP (calculated)

8.757

GRAVY (calculated)

-0.101

Length

171 amino acids

Sequence
(BLAST)

001: MANPRVFFDL TIGGAPAGRV VMELFADTTP KTAENFRALC TGEKGVGKMG KPLHYKGSTF HRVIPGFMCQ GGDFTAGNGT GGESIYGAKF KDENFVKKHT
101: GTGILSMANA GPGTNGSQFF ICTAKTEWLD GKHVVFGQVV EGLDVIKKAE AVGSSSGRCS KPVVVADCGQ L

Best Arabidopsis Sequence Match ( AT2G16600.1 )
(BLAST)

001: MATNPKVYFD MTVGGKSAGR IVMELYADTT PETAENFRAL CTGERGIGKQ GKPLHYKGSS FHRVIPKFMC QGGDFTAGNG TGGESIYGSK FKDENFIKKH
101: TGPGILSMAN AGANTNGSQF FICTEKTSWL DGKHVVFGQV VEGLNVVRDI EKVGSDSGRT SKPVVIADCG QIS

Arabidopsis Description

CYP19-1Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VVJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.