Factsheet for PGSC0003DMT400026079

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g090480.2.1	Tomato	cytosol	96.12	96.12
PGSC0003DMT400066358	Potato	cytosol	71.75	71.55
GSMUA_Achr8P23380_001	Banana	cytosol	69.25	64.77
TraesCS7D01G176900.1	Wheat	cytosol	66.48	64.0
Zm00001d037189_P004	Maize	extracellular	68.42	63.5
Os06t0216800-01	Rice	cytosol	69.53	63.38
EER88080	Sorghum	cytosol	68.14	63.24
TraesCS7A01G175300.1	Wheat	cytosol	66.2	63.06
HORVU7Hr1G036160.1	Barley	cytosol	66.2	62.89
TraesCS7B01G080700.1	Wheat	cytosol	66.2	62.89
GSMUA_Achr5P05580_001	Banana	cytosol	67.87	62.5
EES05845	Sorghum	cytosol	67.87	61.87
Os02t0761100-01	Rice	cytosol	67.59	60.55
PGSC0003DMT400004125	Potato	extracellular	27.98	59.06
TraesCS6A01G313700.1	Wheat	cytosol	65.37	58.13
TraesCS6D01G293100.1	Wheat	cytosol	65.37	57.84
PGSC0003DMT400073838	Potato	cytosol	27.98	57.71
TraesCS6B01G343800.1	Wheat	cytosol	65.1	57.6
PGSC0003DMT400011344	Potato	cytosol	26.87	56.4
HORVU6Hr1G077290.1	Barley	plastid	64.82	51.43
PGSC0003DMT400013826	Potato	cytosol, mitochondrion	24.93	47.37
PGSC0003DMT400015869	Potato	cytosol	24.93	46.88
PGSC0003DMT400078234	Potato	endoplasmic reticulum	25.76	44.93
PGSC0003DMT400016955	Potato	endoplasmic reticulum	25.48	40.17
PGSC0003DMT400013412	Potato	extracellular, plastid	27.15	39.52
PGSC0003DMT400049782	Potato	nucleus	33.8	18.54
PGSC0003DMT400059575	Potato	nucleus	13.02	6.73

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102589477	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	InterPro:IPR029000	UniProt:M1AMM5	PFAM:PF00160	PFAM:PF00515	EnsemblPlantsGene:PGSC0003DMG400010060
PGSC:PGSC0003DMG400010060	EnsemblPlants:PGSC0003DMT400026079	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50005	PFscan:PS50072
PFscan:PS50293	PANTHER:PTHR11071	PANTHER:PTHR11071:SF310	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF50891
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI0002964597	RefSeq:XP_006338217.1
SEG:seg	:	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase d, ppid [Source:PGSC_GENE;Acc:PGSC0003DMG400010060]

Coordinates

chr2:-:44266886..44272836

Molecular Weight (calculated)

40230.1 Da

IEP (calculated)

5.961

GRAVY (calculated)

-0.407

Length

361 amino acids

Sequence
(BLAST)

001: MANPRCYLDI SLGGELEGRM VIELYKDIVP KTVENFRALC TGEKGIGPNT GVPLHFKGSC FHHVIRGFML QGGDISAGNG SGGESIYGLT FEDENFKLKH
101: ERKGMLSMAN SGPNTNGSQF FITASQTHVL DGKNVVFGRV IRGLGMIRVI EHIKTSENGF PDLPVIIEDC GEIPEGADDG TTNFFKDGDT YPDWPIDLDV
201: KPDELAWWIN VVDCIKAFGN EHFKKEDYKM AIRKYRKAVR YTDLCWEKED IDEVKSEYLR KTKSQILANS SACKLKLGDL TGALIDANDA IYDGEDNVKA
301: FYRQGQVYMA MNAIDAAAES FKKALQLEPN NGGIKKELAA AMKKIAYKLE QEKKGYAKMF Q

Best Arabidopsis Sequence Match ( AT2G15790.1 )
(BLAST)

001: MGRSKCFMDI SIGGELEGRI VIELYDDVVP KTAENFRLLC TGEKGLGPNT GVPLHYKGNR FHRVIKGFMI QGGDISANDG TGGESIYGLK FDDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG ICDFFKDGDV YPDWPIDLNE
201: SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301: LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF V

Arabidopsis Description

CYP40Peptidyl-prolyl cis-trans isomerase CYP40 [Source:UniProtKB/Swiss-Prot;Acc:Q9C566]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.