Factsheet for Solyc02g090480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026079	Potato	cytosol	96.12	96.12
Solyc01g108340.2.1	Tomato	cytosol	70.64	70.44
GSMUA_Achr8P23380_001	Banana	cytosol	67.87	63.47
TraesCS7D01G176900.1	Wheat	cytosol	65.37	62.93
Zm00001d037189_P004	Maize	extracellular	67.59	62.72
Os06t0216800-01	Rice	cytosol	68.14	62.12
TraesCS7A01G175300.1	Wheat	cytosol	65.1	62.01
EER88080	Sorghum	cytosol	66.76	61.95
HORVU7Hr1G036160.1	Barley	cytosol	65.1	61.84
TraesCS7B01G080700.1	Wheat	cytosol	65.1	61.84
GSMUA_Achr5P05580_001	Banana	cytosol	66.48	61.22
EES05845	Sorghum	cytosol	67.04	61.11
Solyc11g006070.1.1	Tomato	cytosol, extracellular, unclear	25.76	60.78
Os02t0761100-01	Rice	cytosol	65.1	58.31
Solyc01g111170.2.1	Tomato	extracellular, nucleus	27.15	57.31
Solyc10g054910.1.1	Tomato	extracellular, unclear	27.15	56.98
TraesCS6A01G313700.1	Wheat	cytosol	63.99	56.9
TraesCS6D01G293100.1	Wheat	cytosol	63.99	56.62
TraesCS6B01G343800.1	Wheat	cytosol	63.71	56.37
HORVU6Hr1G077290.1	Barley	plastid	63.43	50.33
Solyc01g096520.2.1	Tomato	cytosol, nucleus, plastid	24.93	47.37
Solyc06g076970.2.1	Tomato	nucleus	25.76	44.93
Solyc06g051650.2.1	Tomato	endoplasmic reticulum	25.21	40.44
Solyc01g009990.2.1	Tomato	plastid	27.15	39.52
Solyc01g111360.2.1	Tomato	endoplasmic reticulum	24.93	39.47
Solyc09g065720.2.1	Tomato	nucleus	33.8	18.48
Solyc08g067090.2.1	Tomato	nucleus	26.59	11.87

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
InterPro:IPR029000	UniProt:K4BCJ7	PFAM:PF00160	PFAM:PF00515	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50005	PFscan:PS50072	PFscan:PS50293	PANTHER:PTHR11071	PANTHER:PTHR11071:SF310	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF50891	EnsemblPlantsGene:Solyc02g090480.2	EnsemblPlants:Solyc02g090480.2.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI0002769249	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:52010862..52016473

Molecular Weight (calculated)

40296.2 Da

IEP (calculated)

5.735

GRAVY (calculated)

-0.394

Length

361 amino acids

Sequence
(BLAST)

001: MANPRCYLDI SLGGELEGRM VIELYKDIVP KTVENFRALC TGEKGIGPNT GVPLHFKGSC FHHVIRGFML QGGDISTGNG SGGESIYGLT FEDENFKLKH
101: ERKGMLSMAN SGPNTNGSQF FITASQTHVL DGKNVVFGRV IRGLGMIRVI EHIKTSENGF PDLPVIIEDC GEIPEGADDG TINFFKDGDT YPDWPIDLDV
201: KPDEVAWWIN VVERIKAFGN EHFKKEDYKM AIRKYRKAVR YTDLCWEKDD IDEVKSEYLR KTKSQILANS SACKLKIGDL TGALIDANDA IYDGEDNVKA
301: FYRQGQVYMA MNAIDAAAES FKKALELEPN NGGIKKELAA AMKKIAYKLE KEKKGYFTIE V

Best Arabidopsis Sequence Match ( AT2G15790.1 )
(BLAST)

001: MGRSKCFMDI SIGGELEGRI VIELYDDVVP KTAENFRLLC TGEKGLGPNT GVPLHYKGNR FHRVIKGFMI QGGDISANDG TGGESIYGLK FDDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG ICDFFKDGDV YPDWPIDLNE
201: SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301: LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF V

Arabidopsis Description

CYP40Peptidyl-prolyl cis-trans isomerase CYP40 [Source:UniProtKB/Swiss-Prot;Acc:Q9C566]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.