Factsheet for Solyc08g067090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059575	Potato	nucleus	83.07	96.28
VIT_04s0008g05090.t01	Wine grape	nucleus	64.03	65.08
KRH61803	Soybean	nucleus	60.07	57.65
KRH52477	Soybean	nucleus	59.7	56.82
Bra011346.1-P	Field mustard	nucleus	51.17	53.63
CDX75243	Canola	nucleus	49.57	52.42
CDX68845	Canola	nucleus	49.07	51.9
AT4G32420.6	Thale cress	nucleus	53.65	51.85
Solyc11g006070.1.1	Tomato	cytosol, extracellular, unclear	9.77	51.63
GSMUA_Achr9P28600_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	40.79	48.6
Solyc01g111170.2.1	Tomato	extracellular, nucleus	10.26	48.54
KRH15996	Soybean	nucleus	50.8	48.41
Solyc10g054910.1.1	Tomato	extracellular, unclear	10.26	48.26
OQU84603	Sorghum	nucleus	46.85	45.55
Zm00001d053620_P016	Maize	nucleus	45.98	45.42
TraesCS6A01G176900.1	Wheat	nucleus	45.74	44.96
HORVU6Hr1G037500.21	Barley	nucleus	45.61	44.84
TraesCS6B01G208900.2	Wheat	cytosol	45.86	43.7
TraesCS6D01G167200.3	Wheat	cytosol	45.86	43.7
Zm00001d015729_P005	Maize	nucleus	45.86	43.19
GSMUA_Achr10P...	Banana	nucleus	43.26	42.07
Solyc06g076970.2.1	Tomato	nucleus	10.75	42.03
Solyc01g096520.2.1	Tomato	cytosol, nucleus, plastid	9.52	40.53
GSMUA_Achr2P15900_001	Banana	nucleus	40.91	39.83
Solyc09g065720.2.1	Tomato	nucleus	32.39	39.7
Solyc06g051650.2.1	Tomato	endoplasmic reticulum	10.51	37.78
Solyc01g111360.2.1	Tomato	endoplasmic reticulum	10.14	35.96
Solyc01g108340.2.1	Tomato	cytosol	13.1	29.28
Solyc01g009990.2.1	Tomato	plastid	8.28	27.02
Solyc02g090480.2.1	Tomato	cytosol	11.87	26.59

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	UniProt:K4CLT5
PFAM:PF00160	PRINTS:PR00153	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF255	SUPFAM:SSF50891
EnsemblPlantsGene:Solyc08g067090.2	EnsemblPlants:Solyc08g067090.2.1	UniParc:UPI000276C09B	SEG:seg	:	:

Description

Peptidyl-prolyl cis-trans isomerase CYP95 [Source:Projected from Arabidopsis thaliana (AT4G32420) UniProtKB/Swiss-Prot;Acc:Q8RWY7]

Coordinates

chr8:+:56001298..56010610

Molecular Weight (calculated)

91033.2 Da

IEP (calculated)

12.107

GRAVY (calculated)

-1.449

Length

809 amino acids

Sequence
(BLAST)

001: MSKKKPQVFL DVSIDGDPVE RMAFELFTDV APKTAENFRA LCTGEKGVSS KTGRPLHYKG TFFHRIVKGS VAQAGDMLRQ DGNYGESIYG GKFPDNDESP
101: KIKHDSQGLL SMAIADRDAR GSIFSITFQA DHHLDRKCVV FGKLVDGLEV LKKIESVGNE EGKPDVTVKI INSGELPDDK RKLNKLKNGK HKKSAKERKK
201: KRRRYYTSES ESSTDSDTES SESESDSDSD VSSDSEISSS SDDRRRKRKR SKRDRHRRSK RKEKRREKKR KRRDKKSKRK SKRASDSPSE SESGRDGLDE
301: DGVRRASGGK HKSMEKKTEG NHSPSLEEGE AVSLHHKKEA TDIFEGEEVE FPKENGERQS NNTKMEIRSD KPVDRQPDVV DDHPGKSRSR SISPKRTMSR
401: SMSISPRRSL SRSRSISPKR SVSRSPSVRS RHSVSRSPSR SGSPHRVSQR RSSSIVKSRS GSPARSISRS PVRGKRGGSV SVSPPARAHS RRRSSRSPSA
501: SPRRQLTPSP HRASSRKSVK SKSRTPVRSY RRSPSGSPVR SSRRSPSKSP VRSSRRSASR SSGRVPSRLR PAGRSPSRSP VKSSRRSVSR SSGRVPSRRS
601: PSRSPGRAPS RNNRRSYSRS PVSAGRRARS PVYDRARSSS RSASVDGSPK RIRRGRGFSE RYSYVRRYRS RSPDRSPARP YRYGERDRYS RYRRSPRRYR
701: SPPRGRTPPR YRGRRSRSRS VSRSPVRYRG RRYSRSPVQS RSPVDRYRRS PSAERRKSPS RSRSRSESKS SRGSRSPKQV SRGKSVSSSA SPPGKAGLVS
801: YGDGSPESG

Best Arabidopsis Sequence Match ( AT4G32420.1 )
(BLAST)

001: MAKKKNPQVF MDVSIDGDPA ETMVFELFPE VAPKTSENFR ALCTGEKGIG PRSGKPLHYK GSFFHRIMKG SSAQAGDFVN RNGTAGESIY AGKFPDESPK
101: LRHEETGLLS MSIADRDKFG SHFHITFRPN QQLDRNNVVF GKLIQGKEIL KKIERVGDEE GKPTVSVKII RCGEYSGDKK KSDGKKNGKH KKSLRVRRKK
201: RRRHSSSESE SSSDSETDSS ESDSESDSDL SSPSFLSSSS HERQKKRKRS SKKDKHRRSK QRDKRHEKKR SMRDKRPKRK SRRSPDSLED SNSGSEASLS
301: DVNVEIGAKK RKHRVSRRTG NSAPAVEKEA ESLHQGKRKG PDLLENRGLR SNGISDAASE QISDRQPDIV DDHPSKSRSR SLSPKRTVSK STSVSPRRSQ
401: SKSPSSSPRW NGGRSPAKGS RQVKNLTNSR RESPGSEEKG RHVRRSPTKS VSRSPVRVKK ERDISRSPSK SLSRSPLRSP KRVISRSPVR GRIARSPSRS
501: PVRSASRGSL GRGPLRRSSR RSPSRSPVRS SRRSLSRSPI QLSRRSLSRS PTRLSRRSLS RSPIRSPRKS VSRSPVRSSR KSVSRSPVRS SRRRISRSPV
601: RSSRKSVSRS PIRLSRRSIS RSPIRLSRRS ISRSPVRGRR RISRSPVPAR RRSVRPRSPP PDRRRSLSRS ASPNGRIRRG RGFSQRFSYA RRYRTSPSPD
701: RSPYRFSDRS DRDRFRSRRR FSPSRFRSPL RGRTPPRYRR RSRSVSPGLC YRNRRYSRSP IRSRSPPYRK RRSPSASHSL SPSRSRSRSK SYSKSPIGTG
801: KARSVSRSPS KARSPSKSDS TSSDNSPGGK KGLVAYD

Arabidopsis Description

CYP95Peptidyl-prolyl cis-trans isomerase CYP95 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWY7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.