Factsheet for TraesCS6D01G167200.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G208900.2	Wheat	cytosol	98.35	98.35
TraesCS6A01G176900.1	Wheat	nucleus	94.7	97.69
HORVU6Hr1G037500.21	Barley	nucleus	93.76	96.72
OQU84603	Sorghum	nucleus	67.26	68.63
Zm00001d053620_P016	Maize	nucleus	64.19	66.54
Zm00001d015729_P005	Maize	nucleus	65.37	64.61
TraesCS6D01G066700.1	Wheat	golgi, plastid	11.07	54.97
TraesCS4D01G001600.1	Wheat	mitochondrion	10.95	51.96
GSMUA_Achr9P28600_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	40.64	50.81
VIT_04s0008g05090.t01	Wine grape	nucleus	46.88	50.0
KRH61803	Soybean	nucleus	47.82	48.16
KRH52477	Soybean	nucleus	47.47	47.41
TraesCS5D01G479900.1	Wheat	nucleus	10.84	46.46
Solyc08g067090.2.1	Tomato	nucleus	43.7	45.86
CDX68845	Canola	nucleus	40.28	44.71
Bra011346.1-P	Field mustard	nucleus	40.4	44.43
CDX75243	Canola	nucleus	39.69	44.05
AT4G32420.6	Thale cress	nucleus	43.23	43.85
PGSC0003DMT400059575	Potato	nucleus	35.81	43.55
GSMUA_Achr10P...	Banana	nucleus	42.64	43.51
GSMUA_Achr2P15900_001	Banana	nucleus	41.46	42.36
TraesCS7D01G403300.2	Wheat	mitochondrion	10.6	41.28
KRH15996	Soybean	nucleus	39.69	39.69
TraesCS5D01G334800.2	Wheat	endoplasmic reticulum	9.89	38.89
TraesCS2D01G244700.1	Wheat	nucleus	28.39	37.89
TraesCS3D01G159000.1	Wheat	plastid	9.89	35.0
TraesCS1D01G000800.2	Wheat	plastid	9.66	33.47
TraesCS7D01G176900.1	Wheat	cytosol	13.78	31.2
TraesCS6D01G293100.1	Wheat	cytosol	14.25	29.66

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	PFAM:PF00160	PRINTS:PR00153
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF255	SUPFAM:SSF50891	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G167200
EnsemblPlants:TraesCS6D01G167200.3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:149726922..149733515

Molecular Weight (calculated)

94974.5 Da

IEP (calculated)

12.008

GRAVY (calculated)

-1.257

Length

849 amino acids

Sequence
(BLAST)

001: MTIEKMGRKK NPIVFLDVSI GDGPDERMIF ELFANVAPLT AENFRALCTG EMGIGQSTKK PLYYKGSTFH RVIKGFMAQD AGQMISTAFL IIYSLLPKIL
101: LILACFFQGG DFSNGDGNGG ESIYGEQFED ENFVLRHDDR GLLSMANAGR NTNGSQFFIT FKPNSHLDRK NTVFGKLILG NDVLKRIEHV DVDGSTNKPI
201: VPVRIVDCGE LVDGKGRGSV STENDKKKVK SKLSIDSSED EGNEEKHKGR RKKSLKRRKK KRRYSSSESE TSSESESSDS ESESDYSSES SDISSSSDDK
301: RRRRKRHSKK DKRKHGKRRR DRRREKRRRK RDRKSKQKSK RMVESDSETG NASDSSSEDA RRKRQRHGRK SKATSQISAE DHTAVAALND ATSTQEKVGT
401: PRSLAQEDKS QLENGEMRTN GVTDSKSERK AGIVPVLTGS RSKSRSQSTS ANHSMSKSMS VSPRSPIKRS NVSLERLVSP SPVHQRSRSP VHASKQKESR
501: SPPRQRNMSM SPHRRSPSKS PPGRASRSPV VRRNRSPVEV RTRSISRSSA RSLQRRSPSR SPERTHVRKS VSPSPTPMEK GKSISRTSAR SPLHKGFSRS
601: PDMPPRKTTS RSPQRNAHRN FSRSPVGSSR RSLTPVRGGR SRRNASRSPS PPRRAVSPLN HGRSPSRSVS PDGSKRIRRG RGFTQRYSFA RQYRSPSVDR
701: SHRYGGRGDR DRYISHRGSR YRSPPRRYRS PPRRASPRYR RRSRSVSRSP PAYRDRTRGG GYSRSPVRSR SPPGGKPSSR GDRARSLSRS RSLSGSRSRS
801: PPPVQDRSPI ASPSPKRASN DRSRSMSVSP EGKKGLVSYG DGSPDSAGK

Best Arabidopsis Sequence Match ( AT3G63400.1 )
(BLAST)

001: MTKKKNPNVF LDVSIGGDPV QRIVIELFAD VVPKTAENFR ALCTGEAGVG KSTGKPLHFK GSSFHRVIKG FMAQGGDFSN GNGTGGESIY GGKFSDENFR
101: LDHDGAGVLS MANCGPNTNG SQFFILFKRQ PHLDGKHVVF GKVVEGMAVI KKMELVGTSD GKPTSPVKII DCGETSQIRA HDAAEREKGK SKKSNKNFSP
201: GDVSDREAKE TRKKESNEKR IKRKRRYSSS DSYSSSSDSD SDSESEAYSS SSYESSSSSD GKHRKRKSTT RHKGRRGERK SKGRSGKKKA RPDRKPSTNS
301: SSDTESSSSS DDEKVGHKAI KSVKVDNADQ HANLDDSVKS RSRSPIRRRN QNSRSKSPSR SPVRVLGNGN RSPSRSPVRD LGNGSRSPRE KPTEETVGKS
401: FRSPSPSGVP KRIRKGRGFT ERYSFARKYH TPSPERSPPR HWPDRRNFQD RNRDRYPSNR SYSERSPRGR FRSPPRRRSP PRYNRRRRST SRSPDGYRRR
501: LRDGSRSQSP RHRSRSQSPR KRQPISQDLK SRLGPQRSPI RGGRTSPAES LSPSHSPSPP GKRGLVSYAD

Arabidopsis Description

CYP63Peptidyl-prolyl cis-trans isomerase CYP63 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.