CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61803	Soybean	nucleus	90.12	90.87
VIT_04s0008g05090.t01	Wine grape	nucleus	60.35	64.45
KRH15996	Soybean	nucleus	61.18	61.25
Solyc08g067090.2.1	Tomato	nucleus	56.82	59.7
PGSC0003DMT400059575	Potato	nucleus	47.41	57.74
Bra011346.1-P	Field mustard	nucleus	50.47	55.57
CDX68845	Canola	nucleus	49.53	55.03
CDX75243	Canola	nucleus	49.18	54.64
AT4G32420.6	Thale cress	nucleus	53.41	54.24
KRH29120	Soybean	endoplasmic reticulum, nucleus	10.71	52.91
KRG97056	Soybean	cytosol	10.82	52.57
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	10.59	52.33
KRH68802	Soybean	cytosol	10.71	52.0
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	10.35	51.16
KRH51416	Soybean	cytosol	10.35	51.16
GSMUA_Achr9P28600_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	40.0	50.07
HORVU6Hr1G037500.21	Barley	nucleus	47.53	49.09
TraesCS6A01G176900.1	Wheat	nucleus	47.29	48.85
OQU84603	Sorghum	nucleus	46.59	47.6
TraesCS6B01G208900.2	Wheat	cytosol	47.53	47.59
Zm00001d053620_P016	Maize	nucleus	45.76	47.5
TraesCS6D01G167200.3	Wheat	cytosol	47.41	47.47
GSMUA_Achr10P...	Banana	nucleus	44.94	45.91
Zm00001d015729_P005	Maize	nucleus	45.65	45.17
KRH13330	Soybean	endoplasmic reticulum, nucleus	9.41	44.2
KRH30309	Soybean	endoplasmic reticulum	10.47	43.63
KRG98290	Soybean	endoplasmic reticulum	10.47	43.63
KRG95597	Soybean	nucleus	33.53	43.25
KRH67275	Soybean	nucleus	33.88	43.11
GSMUA_Achr2P15900_001	Banana	nucleus	42.12	43.08
KRH37809	Soybean	nucleus	9.53	41.75
KRH20677	Soybean	cytosol	8.82	40.98
KRG97736	Soybean	endoplasmic reticulum	10.59	38.3
KRH31143	Soybean	endoplasmic reticulum	10.59	37.82
KRH29272	Soybean	endoplasmic reticulum	9.88	35.59
KRH60706	Soybean	endoplasmic reticulum	9.65	35.34
KRH24294	Soybean	endoplasmic reticulum	9.76	35.17
KRH57738	Soybean	cytosol, nucleus	14.24	33.61
KRH04660	Soybean	cytosol, nucleus	13.76	32.5
KRG93128	Soybean	nucleus, plastid	9.53	32.02
KRG96627	Soybean	nucleus, plastid	9.76	31.92
KRH71172	Soybean	cytosol	13.29	31.3
KRH50243	Soybean	cytosol	13.29	31.3
KRH36359	Soybean	nucleus, plastid	9.18	31.08
KRH33684	Soybean	nucleus, plastid	9.53	30.8
KRH68358	Soybean	plastid	7.76	27.97

Protein Annotations

EntrezGene:100800303	MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:ACUP02003419	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_06G070300	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
UniProt:I1K8X2	InterPro:IPR002130	InterPro:IPR029000	ProteinID:KRH52476.1	EnsemblPlants:KRH52477	ProteinID:KRH52477
ProteinID:KRH52477.1	PFAM:PF00160	PRINTS:PR00153	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF255
SUPFAM:SSF50891	UniParc:UPI000233A447	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:5381397..5387924

Molecular Weight (calculated)

95940.7 Da

IEP (calculated)

12.246

GRAVY (calculated)

-1.395

Length

850 amino acids

Sequence
(BLAST)

001: MTKKKNPLVF MDVSIDGDPV ERMVFELFYD VAPKTAENFR ALCTGEKGIS PNTGKSLHYK GSFFHQIIKG SIVQGGDFVN RNGTAGESIY GSKFPDESPR
101: LKHDATGLLS MAIADRDTLG SHFIITLKAD HHLDRKHVVF GKLVQGHNVL KKIEEFGDEE GHPTVTVKII NCGEYSEDGK KVNKSKMGKN KKSSKDRRKR
201: RKYYSSESGS SSDSDTESLE TDSDSESDMS SSSYMSSSSD DRRKKRKRSK KDKYRRGKRK DKRRDKRRRK KDKRSKRKSK RESGSDSDSE SNSDNSSEGE
301: NIGAQHKGLK RKDNSQKNAE TKSPLVAEKD LPPAHHEKEE MGMLENEEKL SKENGERRNN GIGGADYGSD RSEERQPDVM DDHSGKTRSR SVSPKRPMSK
401: SMSISPRRSA SKSPSVTPKR RLSKSPSVRS PPPSQRSLSR SPARSISRSP SRSISRSPVR GRNGRSVNRS PVRGRNGRSV SRSPVRGRNG RSVRRSPVRG
501: RNGRSVRRSP VRGRNGRSVS RSPVRGRNGR NVNRTPVRGG NGKSVSRSPV RTRSLKSVSR SPVRTRSLRS VSKSPVRARS QSHRSRSSPR APSGKTISRS
601: PVRVLRKSIS RSPVRSPARS LSRSSGWVPS KKSISRSPVR APSRSIRRSY SRSPSPVRRT RTPRGRSVSR SVSPDASPKR IRRGRGFSER YSYARRYRTP
701: SRSPVRSYRY NGRNDRDRYS SYRRFSPRRF RSPPPRGRTP PRYRSRRSRT PSVSRSPRYR ARRYSRSRSP VRSRSPVRSR SPVDRSRPTR VERRASSSRS
801: RSPSKSRSRS RSRSSVESLP RASRDSRSRS SSRSPDGKKG LVSYGDGSPY

Best Arabidopsis Sequence Match ( AT4G32420.1 )
(BLAST)

001: MAKKKNPQVF MDVSIDGDPA ETMVFELFPE VAPKTSENFR ALCTGEKGIG PRSGKPLHYK GSFFHRIMKG SSAQAGDFVN RNGTAGESIY AGKFPDESPK
101: LRHEETGLLS MSIADRDKFG SHFHITFRPN QQLDRNNVVF GKLIQGKEIL KKIERVGDEE GKPTVSVKII RCGEYSGDKK KSDGKKNGKH KKSLRVRRKK
201: RRRHSSSESE SSSDSETDSS ESDSESDSDL SSPSFLSSSS HERQKKRKRS SKKDKHRRSK QRDKRHEKKR SMRDKRPKRK SRRSPDSLED SNSGSEASLS
301: DVNVEIGAKK RKHRVSRRTG NSAPAVEKEA ESLHQGKRKG PDLLENRGLR SNGISDAASE QISDRQPDIV DDHPSKSRSR SLSPKRTVSK STSVSPRRSQ
401: SKSPSSSPRW NGGRSPAKGS RQVKNLTNSR RESPGSEEKG RHVRRSPTKS VSRSPVRVKK ERDISRSPSK SLSRSPLRSP KRVISRSPVR GRIARSPSRS
501: PVRSASRGSL GRGPLRRSSR RSPSRSPVRS SRRSLSRSPI QLSRRSLSRS PTRLSRRSLS RSPIRSPRKS VSRSPVRSSR KSVSRSPVRS SRRRISRSPV
601: RSSRKSVSRS PIRLSRRSIS RSPIRLSRRS ISRSPVRGRR RISRSPVPAR RRSVRPRSPP PDRRRSLSRS ASPNGRIRRG RGFSQRFSYA RRYRTSPSPD
701: RSPYRFSDRS DRDRFRSRRR FSPSRFRSPL RGRTPPRYRR RSRSVSPGLC YRNRRYSRSP IRSRSPPYRK RRSPSASHSL SPSRSRSRSK SYSKSPIGTG
801: KARSVSRSPS KARSPSKSDS TSSDNSPGGK KGLVAYD

Arabidopsis Description

CYP95Peptidyl-prolyl cis-trans isomerase CYP95 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWY7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.