CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04660	Soybean	cytosol, nucleus	96.94	96.94
KRH71172	Soybean	cytosol	81.39	81.16
KRH50243	Soybean	cytosol	81.39	81.16
AT2G15790.1	Thale cress	cytosol	75.0	74.79
Bra015237.1-P	Field mustard	cytosol	74.44	74.24
CDY36653	Canola	cytosol	74.44	74.24
CDX71247	Canola	cytosol	73.89	73.68
GSMUA_Achr8P23380_001	Banana	cytosol	78.61	73.32
GSMUA_Achr5P05580_001	Banana	cytosol	77.5	71.17
TraesCS7D01G176900.1	Wheat	cytosol	73.61	70.67
EER88080	Sorghum	cytosol	75.83	70.18
Os06t0216800-01	Rice	cytosol	76.94	69.95
Zm00001d037189_P004	Maize	extracellular	75.56	69.92
TraesCS7A01G175300.1	Wheat	cytosol	73.33	69.66
TraesCS7B01G080700.1	Wheat	cytosol	73.33	69.47
HORVU7Hr1G036160.1	Barley	cytosol	73.33	69.47
EES05845	Sorghum	cytosol	75.28	68.43
Os02t0761100-01	Rice	cytosol	74.72	66.75
TraesCS6A01G313700.1	Wheat	cytosol	73.06	64.78
TraesCS6D01G293100.1	Wheat	cytosol	72.78	64.22
TraesCS6B01G343800.1	Wheat	cytosol	72.78	64.22
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	30.0	62.79
KRH29120	Soybean	endoplasmic reticulum, nucleus	30.0	62.79
KRG97056	Soybean	cytosol	30.28	62.29
KRH68802	Soybean	cytosol	29.72	61.14
KRH51416	Soybean	cytosol	28.06	58.72
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	28.06	58.72
HORVU6Hr1G077290.1	Barley	plastid	73.06	57.8
KRH13330	Soybean	endoplasmic reticulum, nucleus	27.22	54.14
KRH37809	Soybean	nucleus	27.5	51.03
KRG98290	Soybean	endoplasmic reticulum	28.89	50.98
KRH30309	Soybean	endoplasmic reticulum	28.33	50.0
KRH20677	Soybean	cytosol	25.28	49.73
KRH60706	Soybean	endoplasmic reticulum	27.78	43.1
KRG93128	Soybean	nucleus, plastid	29.44	41.9
KRG97736	Soybean	endoplasmic reticulum	27.22	41.7
KRH31143	Soybean	endoplasmic reticulum	27.22	41.18
KRH29272	Soybean	endoplasmic reticulum	26.94	41.1
KRH24294	Soybean	endoplasmic reticulum	26.67	40.68
KRH36359	Soybean	nucleus, plastid	28.33	40.64
KRG96627	Soybean	nucleus, plastid	28.06	38.85
KRH33684	Soybean	nucleus, plastid	27.22	37.26
KRH68358	Soybean	plastid	23.89	36.44
KRG95597	Soybean	nucleus	41.39	22.61
KRH67275	Soybean	nucleus	40.0	21.56
KRH61803	Soybean	nucleus	34.17	14.59
KRH52477	Soybean	nucleus	33.61	14.24
KRH15996	Soybean	nucleus	31.67	13.43

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100803839	MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:ACUP02002889	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_05G080800	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	UniProt:I1K1S1
InterPro:IPR002130	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR029000	EnsemblPlants:KRH57738
ProteinID:KRH57738	ProteinID:KRH57738.1	PFAM:PF00160	PFAM:PF00515	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50005	PFscan:PS50072	PFscan:PS50293	PANTHER:PTHR11071	PANTHER:PTHR11071:SF310	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF50891	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat
UniParc:UPI0002339F63	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:11891126..11894777

Molecular Weight (calculated)

40017.6 Da

IEP (calculated)

6.328

GRAVY (calculated)

-0.494

Length

360 amino acids

Sequence
(BLAST)

001: MVNPRCFLDV SIGGELEGRI VVELFHDVVP KTAENFRALC TGEKGIGPNT GVPLHYKGVC FHRVIKGFMI QGGDISAGDG TGGESIYGAK FEDENLEVKH
101: ERKGMLSMAN AGPNTNGSQF FITTTRTPHL DGKHVVFGKV LKGMGIVRSA EHVVTGENDR PTQDVVIVNC GEIAEGEDDG VVNFFKDGDT YPDWPADLDV
201: KPDELSWWMS AVDAIKTLGN EQYKKQDYKM ALRKYRKALR YLDVCWEKED IDQENSAALR KTKSQIFTNS SACKLKLGDL QGALLDSDFA MHDGDNAKAL
301: FRKGQAYMLL NDLDAAVESF KKALELEPND GGIKKEYATA RRKVADRRDL EKKAYSRMFK

Best Arabidopsis Sequence Match ( AT2G15790.1 )
(BLAST)

001: MGRSKCFMDI SIGGELEGRI VIELYDDVVP KTAENFRLLC TGEKGLGPNT GVPLHYKGNR FHRVIKGFMI QGGDISANDG TGGESIYGLK FDDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG ICDFFKDGDV YPDWPIDLNE
201: SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301: LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF V

Arabidopsis Description

CYP40Peptidyl-prolyl cis-trans isomerase CYP40 [Source:UniProtKB/Swiss-Prot;Acc:Q9C566]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.