CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 11
extracellular 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96627	Soybean	nucleus, plastid	76.43	77.31
KRH68358	Soybean	plastid	64.26	71.61
VIT_07s0005g02410.t01	Wine grape	plastid	61.98	64.43
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	39.92	61.05
KRH51416	Soybean	cytosol	39.92	61.05
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	39.92	61.05
EES00602	Sorghum	plastid	55.89	60.74
KRG97056	Soybean	cytosol	40.3	60.57
KRH68802	Soybean	cytosol	39.92	60.0
KRH29120	Soybean	endoplasmic reticulum, nucleus	38.78	59.3
CDX76611	Canola	plastid	57.03	59.29
TraesCS3B01G178000.1	Wheat	plastid	53.99	59.17
TraesCS3D01G159000.1	Wheat	plastid	53.99	59.17
TraesCS3A01G151100.1	Wheat	plastid	53.23	58.33
HORVU3Hr1G030750.1	Barley	plastid	53.23	58.33
CDY11395	Canola	plastid	56.65	57.75
Bra007655.1-P	Field mustard	plastid	56.27	57.59
KRG98290	Soybean	endoplasmic reticulum	44.49	57.35
KRH30309	Soybean	endoplasmic reticulum	44.11	56.86
CDX93994	Canola	plastid	55.89	56.32
CDY58761	Canola	plastid	54.75	55.81
Bra014414.1-P	Field mustard	plastid	53.61	54.65
Zm00001d008209_P001	Maize	plastid	53.99	50.53
KRH36359	Soybean	nucleus, plastid	47.91	50.2
KRG93128	Soybean	nucleus, plastid	48.29	50.2
KRH13330	Soybean	endoplasmic reticulum, nucleus	34.22	49.72
KRH37809	Soybean	nucleus	36.12	48.97
KRH31143	Soybean	endoplasmic reticulum	44.11	48.74
KRH20677	Soybean	cytosol	33.84	48.63
AT3G62030.2	Thale cress	endoplasmic reticulum	57.79	48.56
KRG97736	Soybean	endoplasmic reticulum	43.35	48.51
KRH60706	Soybean	endoplasmic reticulum	38.4	43.53
KRH29272	Soybean	endoplasmic reticulum	36.88	41.1
KRH24294	Soybean	endoplasmic reticulum	36.12	40.25
KRH50243	Soybean	cytosol	37.64	27.42
KRH57738	Soybean	cytosol, nucleus	37.26	27.22
KRH71172	Soybean	cytosol	37.26	27.15
KRH04660	Soybean	cytosol, nucleus	36.88	26.94
KRG95597	Soybean	nucleus	38.78	15.48
KRH67275	Soybean	nucleus	37.64	14.82
KRH61803	Soybean	nucleus	30.8	9.61
KRH52477	Soybean	nucleus	30.8	9.53
KRH15996	Soybean	nucleus	30.04	9.31

Protein Annotations

EntrezGene:100526955	MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:ACUP02006550	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_10G139500	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006457	GO:GO:0006464	GO:GO:0006950	GO:GO:0006979
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009642	GO:GO:0009651
GO:GO:0009719	GO:GO:0009735	GO:GO:0009737	GO:GO:0009941	GO:GO:0009987	GO:GO:0010555
GO:GO:0016020	GO:GO:0016853	GO:GO:0019344	GO:GO:0019538	GO:GO:0022626	GO:GO:0031977
GO:GO:0042742	GO:GO:0048046	UniProt:I1LAV9	InterPro:IPR002130	InterPro:IPR029000	EnsemblPlants:KRH33684
ProteinID:KRH33684	ProteinID:KRH33684.1	PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072
PANTHER:PTHR11071	PANTHER:PTHR11071:SF383	SUPFAM:SSF50891	UniParc:UPI000233C64E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:37324122..37327111

Molecular Weight (calculated)

29019.1 Da

IEP (calculated)

8.475

GRAVY (calculated)

-0.437

Length

263 amino acids

Sequence
(BLAST)

001: MTSSFSTQLV QSQNLPPRFH RHVQGNFSQD VSKVSMTHVV RSSTKSQLGY GKTLASRSHY AARFSVSRQS EAKSITYRRM TCTNAKENVL QLQAKVTNKC
101: FFDVEIGGEP AGRVVFGLFG EDVPKTVENF RALCTGEKGY GYKGSYFHRI IQNFMVQGGD FTEGNGTGGI SIYGDSFDDE NFNLKHVGPG VLSMANAGTN
201: TNGSQFFICT VQTPWLDNRH VVFGHVIDGM DVVRTLESQE TGKFDNPRKP CKIADSGELP IDS

Best Arabidopsis Sequence Match ( AT3G62030.3 )
(BLAST)

001: MASSSSMQMV HTSRSIAQIG FGVKSQLVSA NRTTQSVCFG ARSSGIALSS RLHYASPIKQ FSGVYATTKH QRTACVKSMA AEEEVIEPQA KVTNKVYFDV
101: EIGGEVAGRI VMGLFGEVVP KTVENFRALC TGEKKYGYKG SSFHRIIKDF MIQGGDFTEG NGTGGISIYG AKFEDENFTL KHTGPGILSM ANAGPNTNGS
201: QFFICTVKTS WLDNKHVVFG QVIEGMKLVR TLESQETRAF DVPKKGCRIY ACGELPLDA

Arabidopsis Description

ROC4Rotamase CYP 4 [Source:UniProtKB/TrEMBL;Acc:F4IX26]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.