CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67275	Soybean	nucleus	91.05	89.82
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	17.45	66.86
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	17.15	65.7
KRH51416	Soybean	cytosol	17.15	65.7
KRH29120	Soybean	endoplasmic reticulum, nucleus	17.0	65.12
KRG97056	Soybean	cytosol	16.84	63.43
KRH68802	Soybean	cytosol	16.54	62.29
AT3G63400.4	Thale cress	nucleus	49.77	57.54
VIT_00s0179g00290.t01	Wine grape	endoplasmic reticulum, golgi	63.43	57.5
CDY53714	Canola	nucleus	47.8	56.65
Bra040447.1-P	Field mustard	nucleus	45.07	56.14
KRG98290	Soybean	endoplasmic reticulum	17.3	55.88
KRH30309	Soybean	endoplasmic reticulum	16.84	54.41
KRH13330	Soybean	endoplasmic reticulum, nucleus	14.42	52.49
PGSC0003DMT400049782	Potato	nucleus	51.75	51.82
Solyc09g065720.2.1	Tomato	nucleus	51.59	51.52
CDX93909	Canola	nucleus	46.43	50.0
KRH20677	Soybean	cytosol	13.66	49.18
KRH37809	Soybean	nucleus	14.42	48.97
KRG97736	Soybean	endoplasmic reticulum	16.84	47.23
KRH31143	Soybean	endoplasmic reticulum	16.84	46.64
KRH60706	Soybean	endoplasmic reticulum	15.63	44.4
GSMUA_Achr5P03050_001	Banana	nucleus	46.74	44.38
KRH29272	Soybean	endoplasmic reticulum	15.63	43.64
HORVU2Hr1G056230.1	Barley	nucleus	40.67	43.23
KRH24294	Soybean	endoplasmic reticulum	15.48	43.22
TraesCS2B01G260600.1	Wheat	nucleus	41.58	43.15
TraesCS2D01G244700.1	Wheat	nucleus	41.27	42.77
TraesCS2A01G237700.1	Wheat	nucleus	41.58	42.61
KRG93128	Soybean	nucleus, plastid	16.24	42.29
KRH57738	Soybean	cytosol, nucleus	22.61	41.39
EER95944	Sorghum	nucleus	40.36	41.05
KRH36359	Soybean	nucleus, plastid	15.63	41.04
KRH04660	Soybean	cytosol, nucleus	22.31	40.83
KRG96627	Soybean	nucleus, plastid	15.63	39.62
Zm00001d007826_P002	Maize	nucleus	39.76	39.1
KRH50243	Soybean	cytosol	21.4	39.06
KRH33684	Soybean	nucleus, plastid	15.48	38.78
KRH71172	Soybean	cytosol	21.09	38.5
Zm00001d018944_P004	Maize	nucleus	40.52	37.87
KRH68358	Soybean	plastid	12.59	35.17
KRH52477	Soybean	nucleus	43.25	33.53
KRH61803	Soybean	nucleus	42.79	33.45
KRH15996	Soybean	nucleus	35.05	27.21

Protein Annotations

EntrezGene:100791082	MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:ACUP02012120	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_19G160200	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016853	GO:GO:0019538	UniProt:I1N9L1	InterPro:IPR002130	InterPro:IPR029000	EnsemblPlants:KRG95597
ProteinID:KRG95597	ProteinID:KRG95597.1	ProteinID:KRG95598.1	PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF396	SUPFAM:SSF50891	UniParc:UPI00023DDE15	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:42107189..42113074

Molecular Weight (calculated)

73526.9 Da

IEP (calculated)

11.375

GRAVY (calculated)

-1.428

Length

659 amino acids

Sequence
(BLAST)

001: MGLEKNPLVF FDVSIDGDPV ERIVIQLFAS IVPRTAENFR ALCTGEKGIG ELTGKPLHYK GTSFHRIIRG FMAQGGDFSR GNGTGGESIY GGKFVDENFK
101: LTHDGPGVLS MANSGPNTNG SQFFITFKRQ PHLDGKHVVF GKVVNGMDIL KKIEPVGTSD GKPTQPVKII DCGEVSETKI QHTADKEKGK RRKSGKSLSS
201: DDGSDKKSRG KRKKSSKDTR KRRRRYSTSD SDSDSYSSDS ESDSDSESDS SVSDSSYSSD GKHQKRRSKR KHGKKRKIGR KQRKRSQHSR SRRARRKSRR
301: SSEDSSDTDS ASGSSSGDEK TDRHASGRKT LADNEARRNL DTGKQSSSPP QQRQTIPEQK MDPKVRRIVD KQSHEEGELS PENGAFVNNR HDTEAEFSKP
401: AKQHANSDDL NHNRGASPRR SPTRDSRELN QGHASLLASP GQKVSEPAAP KHGQGFSKSP SPNGMPKRIK KGRGFTERYA FARRYRTPSP ERSPRTYRYG
501: DRNIRRNFDR NTSYRSYSGR SPPRRFRSPP GGRNRPRYQS RRSRSRSNSR SPVRGHFSDR DRSRSPRRSP SPEDRRPPIS DQLKSRLGPR SDERLPDRGR
601: SKSKSRSNGS SCSRSPDATP PKRYDKRTSV SRSRSRSSSP SGQRGLVSYG DASPDSGSG

Best Arabidopsis Sequence Match ( AT3G63400.1 )
(BLAST)

001: MTKKKNPNVF LDVSIGGDPV QRIVIELFAD VVPKTAENFR ALCTGEAGVG KSTGKPLHFK GSSFHRVIKG FMAQGGDFSN GNGTGGESIY GGKFSDENFR
101: LDHDGAGVLS MANCGPNTNG SQFFILFKRQ PHLDGKHVVF GKVVEGMAVI KKMELVGTSD GKPTSPVKII DCGETSQIRA HDAAEREKGK SKKSNKNFSP
201: GDVSDREAKE TRKKESNEKR IKRKRRYSSS DSYSSSSDSD SDSESEAYSS SSYESSSSSD GKHRKRKSTT RHKGRRGERK SKGRSGKKKA RPDRKPSTNS
301: SSDTESSSSS DDEKVGHKAI KSVKVDNADQ HANLDDSVKS RSRSPIRRRN QNSRSKSPSR SPVRVLGNGN RSPSRSPVRD LGNGSRSPRE KPTEETVGKS
401: FRSPSPSGVP KRIRKGRGFT ERYSFARKYH TPSPERSPPR HWPDRRNFQD RNRDRYPSNR SYSERSPRGR FRSPPRRRSP PRYNRRRRST SRSPDGYRRR
501: LRDGSRSQSP RHRSRSQSPR KRQPISQDLK SRLGPQRSPI RGGRTSPAES LSPSHSPSPP GKRGLVSYAD

Arabidopsis Description

CYP63Peptidyl-prolyl cis-trans isomerase CYP63 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.