CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53714	Canola	nucleus	81.86	90.11
AT3G63400.4	Thale cress	nucleus	66.5	71.4
CDX72741	Canola	cytosol	18.46	65.7
CDX69094	Canola	cytosol	18.46	65.7
CDY22414	Canola	cytosol, extracellular	18.3	65.12
CDY12100	Canola	cytosol	18.14	64.53
CDX90292	Canola	cytosol	18.14	64.53
CDY26779	Canola	cytosol	17.48	62.57
CDY47469	Canola	cytosol	17.48	62.57
CDY27248	Canola	cytosol	17.97	60.44
CDX72175	Canola	cytosol	17.81	59.56
CDY61026	Canola	endoplasmic reticulum	17.16	52.24
CDX71155	Canola	endoplasmic reticulum	17.16	52.24
CDY58941	Canola	endoplasmic reticulum	17.16	52.24
CDY55458	Canola	endoplasmic reticulum	17.16	52.24
CDY52123	Canola	endoplasmic reticulum	16.99	50.98
CDX80340	Canola	endoplasmic reticulum	16.99	50.98
CDX91486	Canola	cytosol	15.52	47.5
CDX72190	Canola	endoplasmic reticulum	17.32	47.32
CDX74892	Canola	cytosol, plastid	15.69	47.06
CDY27255	Canola	endoplasmic reticulum	17.16	46.88
KRG95597	Soybean	nucleus	50.0	46.43
CDX93307	Canola	plastid	15.52	46.34
VIT_00s0179g00290.t01	Wine grape	endoplasmic reticulum, golgi	54.9	46.22
KRH67275	Soybean	nucleus	50.16	45.96
CDY18371	Canola	cytosol, plastid	15.52	45.89
PGSC0003DMT400049782	Potato	nucleus	49.02	45.59
Solyc09g065720.2.1	Tomato	nucleus	48.69	45.15
CDX75476	Canola	endoplasmic reticulum	16.18	44.2
CDX69100	Canola	endoplasmic reticulum	16.18	44.2
CDX76307	Canola	endoplasmic reticulum	15.85	43.5
CDY17501	Canola	endoplasmic reticulum	15.69	42.67
CDY11395	Canola	plastid	16.18	38.37
CDX76611	Canola	plastid	15.69	37.94
CDY58761	Canola	plastid	15.85	37.6
CDX78508	Canola	plastid	15.69	37.5
CDX70495	Canola	plastid	15.69	37.35
TraesCS2B01G260600.1	Wheat	nucleus	38.73	37.32
CDX93994	Canola	plastid	15.85	37.16
TraesCS2D01G244700.1	Wheat	nucleus	38.4	36.95
HORVU2Hr1G056230.1	Barley	nucleus	37.42	36.94
TraesCS2A01G237700.1	Wheat	nucleus	38.4	36.55
EER95944	Sorghum	nucleus	38.56	36.42
GSMUA_Achr5P03050_001	Banana	nucleus	41.01	36.17
CDX71247	Canola	cytosol	20.59	34.9
Zm00001d007826_P002	Maize	nucleus	38.07	34.78
CDY36653	Canola	cytosol	20.42	34.63
Zm00001d018944_P004	Maize	nucleus	38.4	33.33
CDX68845	Canola	nucleus	35.13	28.1
CDX75243	Canola	nucleus	34.31	27.45

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	GO:A0A078DZQ7	EnsemblPlants:CDX93909	ProteinID:CDX93909	ProteinID:CDX93909.1
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00156727001	InterPro:IPR002130	InterPro:IPR029000	PFAM:PF00160
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF396	SUPFAM:SSF50891
SignalP:SignalP-noTM	UniParc:UPI0004EDC539	SEG:seg	:	:	:

Description

BnaC04g20680D

Coordinates

chrLK031878:-:611976..615390

Molecular Weight (calculated)

67337.0 Da

IEP (calculated)

11.267

GRAVY (calculated)

-1.173

Length

612 amino acids

Sequence
(BLAST)

001: MQTNPSTRAL GLLFCTCIAP PCPMNGGRDR KASTYSPDSG GNGSPGATVV AGPERSKNHC LKLSVDYSHP LGISMSSSKK KNPTVFLDVS IGGDPLERIV
101: IELFAHVVPK TAENFRALCT GEAGLGKTTG KPLHFKGSSF HRVIKGFMAQ GGDFSNGNGT GGESIYGGKF PDENFELDHE EGGVLSMANC GPNTNGSQFF
201: ILFKRQPHLD GKHVVFGKVV KGMEVVKKME LVGTSDGKPT SNVKIIDCGQ VSQLKAEDAA EKDKGRKLKK SSREKRIKRK RRYSSSSDLY SSSSESETDS
301: SSGSSSDGKR RKRRRSTKRH KGRRGESNIK GRKGKKNARG DRPPQRRNKD SSSDTESSNS DDERMGHEKA KKSKKAKDGV PAADSSPAEK KFSGESLLNE
401: NELVGNGKAT KVDNDSVKSR SMSPVSRRDE NSRSKSPSRR PVRDVGNRST SPARKSSPNG EPKRIRKGRG FTERYSFARK YRTPSPERSP PRRSLEDRNT
501: RDRYPSNRSY SERSRFRSPP RRRSPPRYNR RRRSISRSPD GQRRRLRESQ SPSHRSPSPR KWQPISQDLK SRLGPQRSPP VIGGGRTSPA QSLSASPSTS
601: PSGQRGLVSY AD

Best Arabidopsis Sequence Match ( AT3G63400.1 )
(BLAST)

001: MTKKKNPNVF LDVSIGGDPV QRIVIELFAD VVPKTAENFR ALCTGEAGVG KSTGKPLHFK GSSFHRVIKG FMAQGGDFSN GNGTGGESIY GGKFSDENFR
101: LDHDGAGVLS MANCGPNTNG SQFFILFKRQ PHLDGKHVVF GKVVEGMAVI KKMELVGTSD GKPTSPVKII DCGETSQIRA HDAAEREKGK SKKSNKNFSP
201: GDVSDREAKE TRKKESNEKR IKRKRRYSSS DSYSSSSDSD SDSESEAYSS SSYESSSSSD GKHRKRKSTT RHKGRRGERK SKGRSGKKKA RPDRKPSTNS
301: SSDTESSSSS DDEKVGHKAI KSVKVDNADQ HANLDDSVKS RSRSPIRRRN QNSRSKSPSR SPVRVLGNGN RSPSRSPVRD LGNGSRSPRE KPTEETVGKS
401: FRSPSPSGVP KRIRKGRGFT ERYSFARKYH TPSPERSPPR HWPDRRNFQD RNRDRYPSNR SYSERSPRGR FRSPPRRRSP PRYNRRRRST SRSPDGYRRR
501: LRDGSRSQSP RHRSRSQSPR KRQPISQDLK SRLGPQRSPI RGGRTSPAES LSPSHSPSPP GKRGLVSYAD

Arabidopsis Description

CYP63Peptidyl-prolyl cis-trans isomerase CYP63 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.