CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDX89437
CDY03368
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13120.1	CDX89437	AT4G25200.1	21798944
AT5G13120.1	CDY03368	AT4G25200.1	21798944
AT5G13120.1	CDX74635	AT5G35750.1	18642946
AT5G13120.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70495	Canola	plastid	96.88	96.5
Bra006182.1-P	Field mustard	plastid	95.7	95.33
AT5G13120.1	Thale cress	plastid	87.5	86.49
CDY47469	Canola	cytosol	46.88	70.18
CDY26779	Canola	cytosol	46.48	69.59
Zm00001d011104_P001	Maize	plastid	64.06	66.13
VIT_01s0146g00110.t01	Wine grape	plastid	67.58	66.03
CDY12100	Canola	cytosol	44.14	65.7
CDX90292	Canola	cytosol	44.14	65.7
CDX72741	Canola	cytosol	44.14	65.7
CDY22414	Canola	cytosol, extracellular	43.75	65.12
GSMUA_Achr2P21150_001	Banana	plastid	63.28	65.06
EES17522	Sorghum	plastid	63.28	65.06
Zm00001d035761_P001	Maize	plastid	63.67	64.94
TraesCS1A01G007500.1	Wheat	golgi	62.11	64.9
KRH36359	Soybean	nucleus, plastid	63.28	64.54
PGSC0003DMT400013412	Potato	extracellular, plastid	62.5	64.52
TraesCS1B01G011100.1	Wheat	plastid	61.72	64.49
Os05t0103200-01	Rice	plastid	62.89	64.4
Solyc01g009990.2.1	Tomato	plastid	62.11	64.11
TraesCS1D01G000800.2	Wheat	plastid	61.33	64.08
KRG93128	Soybean	nucleus, plastid	63.28	64.03
CDX69094	Canola	cytosol	41.41	61.63
CDY61026	Canola	endoplasmic reticulum	45.7	58.21
CDY58941	Canola	endoplasmic reticulum	45.7	58.21
CDY55458	Canola	endoplasmic reticulum	45.7	58.21
CDY52123	Canola	endoplasmic reticulum	46.09	57.84
CDX80340	Canola	endoplasmic reticulum	46.09	57.84
CDX71155	Canola	endoplasmic reticulum	45.31	57.71
HORVU1Hr1G000710.1	Barley	mitochondrion, plastid	61.72	56.23
CDY27248	Canola	cytosol	39.84	56.04
CDX72175	Canola	cytosol	39.84	55.74
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	58.2	54.98
CDY58761	Canola	plastid	53.12	52.71
CDX76611	Canola	plastid	51.95	52.57
CDX93994	Canola	plastid	53.12	52.11
CDY11395	Canola	plastid	51.56	51.16
CDY27255	Canola	endoplasmic reticulum	43.75	50.0
CDX72190	Canola	endoplasmic reticulum	43.36	49.55
CDX75476	Canola	endoplasmic reticulum	41.8	47.77
CDX69100	Canola	endoplasmic reticulum	41.41	47.32
CDX76307	Canola	endoplasmic reticulum	40.62	46.64
CDY17501	Canola	endoplasmic reticulum	40.23	45.78
CDX91486	Canola	cytosol	34.77	44.5
CDX74892	Canola	cytosol, plastid	35.16	44.12
CDX93307	Canola	plastid	34.77	43.41
CDY18371	Canola	cytosol, plastid	34.77	43.0
CDY36653	Canola	cytosol	40.23	28.53
CDX71247	Canola	cytosol	40.23	28.53
CDY53714	Canola	nucleus	37.11	17.09
CDX93909	Canola	nucleus	37.5	15.69
CDX68845	Canola	nucleus	28.52	9.54
CDX75243	Canola	nucleus	28.12	9.41

Protein Annotations

MapMan:1.1.8.1.4.5	MapMan:18.12.1	Gene3D:2.40.100.10	GO:A0A078CTN4	EnsemblPlants:CDX78508	ProteinID:CDX78508
ProteinID:CDX78508.1	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00129908001	InterPro:IPR002130	InterPro:IPR029000
PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF383
SUPFAM:SSF50891	UniParc:UPI0004EF4D08	SEG:seg	:	:	:

Description

BnaA03g04200D

Coordinates

chrLK031815:-:1052642..1054452

Molecular Weight (calculated)

27911.3 Da

IEP (calculated)

10.197

GRAVY (calculated)

-0.289

Length

256 amino acids

Sequence
(BLAST)

001: MAAFSMTLSN PRSFSAAPRR LSPINTSAPS STTYRLSTKS TFHFIKFPSL TASSLLLRTS STKRNRRCLS VQSSAEPLAE PQSKITHKVY FDISVGNPVG
101: KLAGRIVIGL FGDDVPQTVE NFRALCTGEK GFGYKGSTFH RVIRDFMIQG GDFDKGNGTG GKSVYGRTFK DENFNLSHVG PGVVSMANAG PNTNGSQFFI
201: CTVKTSWLDG RHVVFGQVIE GMDVVRLIEE QETDRGDRPR KKVVIADCGQ LPMSEA

Best Arabidopsis Sequence Match ( AT5G13120.1 )
(BLAST)

001: MATLSMTLSN PKSLSAPPRR LSPINTSAFT STSFRLRTKS SFDSISFSSS TPFSASSLLL HTSYTKRNHR CFSVQSNAEV VTEPQSKITH KVYFDISVGN
101: PVGKLAGRIV IGLYGDDVPQ TVENFRALCT GEKGFGYKGS TFHRVIRDFM IQGGDFEKGN GTGGKSVYGR TFKDENFKLS HVGPGVLSMA NAGPNTNGSQ
201: FFICTIKTSW LDGRHVVFGQ VIEGMEVVKL IEEQETDRGD RPRKKVVIAD CGQLPMSEA

Arabidopsis Description

PNSL5Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UN74]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.