Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 8
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
23128297
golgi: 25769308 unclear: 25769308 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G011100.1 | Wheat | plastid | 96.73 | 96.73 |
| TraesCS1D01G000800.2 | Wheat | plastid | 96.73 | 96.73 |
| HORVU1Hr1G000710.1 | Barley | mitochondrion, plastid | 95.1 | 82.92 |
| Os05t0103200-01 | Rice | plastid | 84.08 | 82.4 |
| Zm00001d011104_P001 | Maize | plastid | 83.27 | 82.26 |
| EES17522 | Sorghum | plastid | 83.27 | 81.93 |
| Zm00001d035761_P001 | Maize | plastid | 83.67 | 81.67 |
| GSMUA_Achr2P21150_001 | Banana | plastid | 72.65 | 71.49 |
| Solyc01g009990.2.1 | Tomato | plastid | 66.53 | 65.73 |
| PGSC0003DMT400013412 | Potato | extracellular, plastid | 66.12 | 65.32 |
| KRH36359 | Soybean | nucleus, plastid | 66.12 | 64.54 |
| VIT_01s0146g00110.t01 | Wine grape | plastid | 68.57 | 64.12 |
| KRG93128 | Soybean | nucleus, plastid | 65.71 | 63.64 |
| TraesCS6A01G068900.1 | Wheat | cytosol | 44.08 | 63.16 |
| Bra006182.1-P | Field mustard | plastid | 65.31 | 62.26 |
| CDX78508 | Canola | plastid | 64.9 | 62.11 |
| CDX70495 | Canola | plastid | 64.9 | 61.87 |
| GSMUA_Achr6P16580_001 | Banana | endoplasmic reticulum, mitochondrion | 66.94 | 60.52 |
| TraesCS6A01G405900.1 | Wheat | cytosol | 40.82 | 59.88 |
| AT5G13120.1 | Thale cress | plastid | 63.27 | 59.85 |
| TraesCS4A01G312600.1 | Wheat | cytosol, mitochondrion, plastid | 42.86 | 58.33 |
| TraesCS3A01G151100.1 | Wheat | plastid | 52.65 | 53.75 |
| TraesCS7A01G410100.2 | Wheat | mitochondrion | 47.35 | 53.21 |
| TraesCS5A01G328900.1 | Wheat | endoplasmic reticulum | 44.08 | 50.0 |
| TraesCS5A01G467000.1 | Wheat | golgi, unclear | 39.59 | 48.99 |
| TraesCS6A01G405800.1 | Wheat | cytosol | 42.45 | 42.11 |
| TraesCS7A01G175300.1 | Wheat | cytosol | 42.45 | 27.44 |
| TraesCS6A01G313700.1 | Wheat | cytosol | 43.27 | 26.11 |
| TraesCS2A01G237700.1 | Wheat | nucleus | 36.33 | 13.84 |
| TraesCS6A01G176900.1 | Wheat | nucleus | 33.88 | 10.09 |
Protein Annotations
| MapMan:1.1.8.1.4.5 | MapMan:18.12.1 | Gene3D:2.40.100.10 | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS |
| InterPro:Cyclophilin-type_PPIase_dom | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006457 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR002130 |
| InterPro:IPR029000 | PFAM:PF00160 | PIRSF:PIRSF001467 | PRINTS:PR00153 | ScanProsite:PS00170 | PFscan:PS50072 |
| PANTHER:PTHR11071 | PANTHER:PTHR11071:SF383 | SUPFAM:SSF50891 | EnsemblPlantsGene:TraesCS1A01G007500 | EnsemblPlants:TraesCS1A01G007500.1 | TIGR:cd01926 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:4045758..4048321
Molecular Weight (calculated)
25943.0 Da
IEP (calculated)
9.840
GRAVY (calculated)
-0.150
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAATSSFAT LAIARPAAAG PAAQRALLAS KAPSSALSLR GGRIASPALS VSQQSRARFV PSATAEPYAP ELQSKVTNKV YFDISIGNPV GKNVGRIVIG
101: LYGDDVPQTV ENFRALCTGE KGFGYKGSSF HRVIKDFMIQ GGDFDKGNGT GGKSIYGRTF KDENFQLVHT GPGVLSMANA GPNTNGSQFF ICTVKTPWLD
201: GRHVVFGQVL EGMDIVRTIE SSETDRGDRP KKKVVISECG ELPVV
101: LYGDDVPQTV ENFRALCTGE KGFGYKGSSF HRVIKDFMIQ GGDFDKGNGT GGKSIYGRTF KDENFQLVHT GPGVLSMANA GPNTNGSQFF ICTVKTPWLD
201: GRHVVFGQVL EGMDIVRTIE SSETDRGDRP KKKVVISECG ELPVV
001: MATLSMTLSL SAPPRRLSPI NTSAFTSTSF RLRTKSSFDS ISFSSSTPFS ASSLLLHTSY TKRNHRCFSV QSNAEVVTEP QSKITHKVYF DISVGNPVGK
101: LAGRIVIGLY GDDVPQTVEN FRALCTGEKG FGYKGSTFHR VIRDFMIQGG DFEKGNGTGG KSVYGRTFKD ENFKLSHVGP GVLSMANAGP NTNGSQFFIC
201: TIKTSWLDGR HVVFGQVIEG MEVVKLIEEQ ETDRGDRPRK KVVIADCGQL PMSEA
101: LAGRIVIGLY GDDVPQTVEN FRALCTGEKG FGYKGSTFHR VIRDFMIQGG DFEKGNGTGG KSVYGRTFKD ENFKLSHVGP GVLSMANAGP NTNGSQFFIC
201: TIKTSWLDGR HVVFGQVIEG MEVVKLIEEQ ETDRGDRPRK KVVIADCGQL PMSEA
Arabidopsis Description
PNSL5Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UN74]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.