Factsheet for Zm00001d011104_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014297_P006
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13120.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT5G13120.1	Zm00001d052194_P001	AT4G25200.1	21798944
AT5G13120.1	Zm00001d014297_P006	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17522	Sorghum	plastid	95.16	94.78
Zm00001d035761_P001	Maize	plastid	95.16	94.02
Os05t0103200-01	Rice	plastid	85.08	84.4
TraesCS1B01G011100.1	Wheat	plastid	82.26	83.27
TraesCS1A01G007500.1	Wheat	golgi	82.26	83.27
TraesCS1D01G000800.2	Wheat	plastid	81.45	82.45
GSMUA_Achr2P21150_001	Banana	plastid	74.6	74.3
Zm00001d009267_P001	Maize	cytosol	3.23	72.73
HORVU1Hr1G000710.1	Barley	mitochondrion, plastid	82.26	72.6
Solyc01g009990.2.1	Tomato	plastid	68.15	68.15
PGSC0003DMT400013412	Potato	extracellular, plastid	66.94	66.94
VIT_01s0146g00110.t01	Wine grape	plastid	70.56	66.79
KRH36359	Soybean	nucleus, plastid	65.73	64.94
Bra006182.1-P	Field mustard	plastid	66.53	64.2
CDX78508	Canola	plastid	66.13	64.06
KRG93128	Soybean	nucleus, plastid	65.32	64.03
CDX70495	Canola	plastid	65.73	63.42
Zm00001d016661_P001	Maize	plastid	43.95	63.37
Zm00001d016660_P001	Maize	cytosol	43.95	63.37
Zm00001d050635_P001	Maize	plastid	43.55	63.16
AT5G13120.1	Thale cress	plastid	65.32	62.55
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	67.74	61.99
Zm00001d030339_P001	Maize	mitochondrion	38.31	51.91
Zm00001d014732_P002	Maize	mitochondrion	45.97	51.82
Zm00001d022631_P002	Maize	plastid	41.94	48.15
Zm00001d008209_P001	Maize	plastid	50.81	44.84
Zm00001d036442_P001	Maize	mitochondrion	45.16	40.43
Zm00001d014731_P017	Maize	endoplasmic reticulum, vacuole	38.31	32.09
Zm00001d013010_P002	Maize	plastid	34.68	27.92
Zm00001d037189_P004	Maize	extracellular	40.32	25.71
Zm00001d007826_P002	Maize	nucleus	34.68	12.84
Zm00001d018944_P004	Maize	nucleus	35.48	12.48
Zm00001d053620_P016	Maize	nucleus	29.44	8.91
Zm00001d015729_P005	Maize	nucleus	29.03	8.38

Protein Annotations

MapMan:1.1.8.1.4.5	EntrezGene:100282887	MapMan:18.12.1	Gene3D:2.40.100.10	ProteinID:AQK95754.1	UniProt:B6TCE9
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EMBL:EU962664	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000
PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF383
SUPFAM:SSF50891	UniParc:UPI000182D156	EnsemblPlantsGene:Zm00001d011104	EnsemblPlants:Zm00001d011104_P001	EnsemblPlants:Zm00001d011104_T001	SEG:seg

Description

Photosynthetic NDH subunit of lumenal location 5 chloroplastic

Coordinates

chr8:-:139082575..139085139

Molecular Weight (calculated)

26219.2 Da

IEP (calculated)

9.698

GRAVY (calculated)

-0.157

Length

248 amino acids

Sequence
(BLAST)

001: MAATATSFAT LAVARSAGQR FLLASKAAPS PLLSLRGARL PSQGVSLSGG LAASPSHSRA RFATSASAEP KEAELQSKIT NKVYFDISIG NPVGKNVGRI
101: VIGLYGDDVP QTTENFRALC TGEKGFGYKG SSFHRVISDF MIQGGDFDKG NGTGGKSIYG RTFKDENFKL VHTGPGVVSM ANAGPNTNGS QFFICTVKTP
201: WLDGRHVVFG QVLEGMDVVS LIESQETDRG DRPKKKVVIS ECGELPVV

Best Arabidopsis Sequence Match ( AT5G13120.2 )
(BLAST)

001: MATLSMTLSL SAPPRRLSPI NTSAFTSTSF RLRTKSSFDS ISFSSSTPFS ASSLLLHTSY TKRNHRCFSV QSNAEVVTEP QSKITHKVYF DISVGNPVGK
101: LAGRIVIGLY GDDVPQTVEN FRALCTGEKG FGYKGSTFHR VIRDFMIQGG DFEKGNGTGG KSVYGRTFKD ENFKLSHVGP GVLSMANAGP NTNGSQFFIC
201: TIKTSWLDGR HVVFGQVIEG MEVVKLIEEQ ETDRGDRPRK KVVIADCGQL PMSEA

Arabidopsis Description

PNSL5Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UN74]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.