Factsheet for Bra006182.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
extracellular 1
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013872.1-P
Bra035381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13120.1	Bra013872.1-P	AT4G25200.1	21798944
AT5G13120.1	Bra035381.1-P	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70495	Canola	plastid	96.5	96.5
CDX78508	Canola	plastid	95.33	95.7
AT5G13120.1	Thale cress	plastid	88.72	88.03
Bra037296.1-P	Field mustard	cytosol	46.69	70.18
Zm00001d011104_P001	Maize	plastid	64.2	66.53
VIT_01s0146g00110.t01	Wine grape	plastid	67.32	66.03
Bra010728.1-P	Field mustard	cytosol	43.97	65.7
EES17522	Sorghum	plastid	63.42	65.46
TraesCS1A01G007500.1	Wheat	golgi	62.26	65.31
Bra033574.1-P	Field mustard	cytosol	43.58	65.12
Zm00001d035761_P001	Maize	plastid	63.42	64.94
TraesCS1B01G011100.1	Wheat	plastid	61.87	64.9
GSMUA_Achr2P21150_001	Banana	plastid	62.65	64.66
KRH36359	Soybean	nucleus, plastid	63.03	64.54
PGSC0003DMT400013412	Potato	extracellular, plastid	62.26	64.52
TraesCS1D01G000800.2	Wheat	plastid	61.48	64.49
Os05t0103200-01	Rice	plastid	62.65	64.4
Solyc01g009990.2.1	Tomato	plastid	61.87	64.11
KRG93128	Soybean	nucleus, plastid	62.65	63.64
Bra011568.1-P	Field mustard	cytosol	41.25	61.99
Bra002623.1-P	Field mustard	cytosol	45.53	59.69
Bra018353.1-P	Field mustard	endoplasmic reticulum	45.53	58.21
Bra006748.1-P	Field mustard	endoplasmic reticulum	45.53	58.21
HORVU1Hr1G000710.1	Barley	mitochondrion, plastid	61.87	56.58
Bra007214.1-P	Field mustard	cytosol	39.69	56.04
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	57.59	54.61
Bra014414.1-P	Field mustard	plastid	51.75	51.55
Bra007655.1-P	Field mustard	plastid	51.36	51.36
Bra007200.1-P	Field mustard	endoplasmic reticulum	43.97	50.45
Bra011574.1-P	Field mustard	endoplasmic reticulum	42.02	48.21
Bra034667.1-P	Field mustard	endoplasmic reticulum	40.47	46.64
Bra005088.1-P	Field mustard	plastid	35.02	44.12
Bra017105.1-P	Field mustard	plastid	35.02	43.48
Bra015237.1-P	Field mustard	cytosol	40.08	28.53
Bra040447.1-P	Field mustard	nucleus	36.97	17.96
Bra011346.1-P	Field mustard	nucleus	28.02	9.33

Protein Annotations

MapMan:1.1.8.1.4.5	MapMan:18.12.1	Gene3D:2.40.100.10	EnsemblPlantsGene:Bra006182	EnsemblPlants:Bra006182.1	EnsemblPlants:Bra006182.1-P
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009533	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0010275	GO:GO:0016020	GO:GO:0016043	GO:GO:0016853	GO:GO:0019538
GO:GO:0031977	GO:GO:0043424	InterPro:IPR002130	InterPro:IPR029000	UniProt:M4CPP3	PFAM:PF00160
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF383	SUPFAM:SSF50891
UniParc:UPI000253FA4A	SEG:seg	:	:	:	:

Description

AT5G13120 (E=1e-118) | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein

Coordinates

chrA03:-:2382718..2384533

Molecular Weight (calculated)

27931.4 Da

IEP (calculated)

9.956

GRAVY (calculated)

-0.235

Length

257 amino acids

Sequence
(BLAST)

001: MAAFSMTLLN PKAFSAAPRR LSPINNTSAL SSTSFRLNTK STFDSIKFPS LIASSLLLHT SSTKRNRRCL SVQSSAEPLA EPQSKITHKV YFDISVGNPV
101: GKLAGRIVIG LFGDDVPQTV ENFRALCTGE KGFGYKGSTF HRVIRDFMIQ GGDFDKGNGT GGKSVYGRTF KDENFNLSHV GPGVVSMANA GPNTNGSQFF
201: ICTVKTSWLD GRHVVFGQVI EGMDVVRLIE EQETDRGDRP RKKVVIADCG QLPMSEA

Best Arabidopsis Sequence Match ( AT5G13120.1 )
(BLAST)

001: MATLSMTLSN PKSLSAPPRR LSPINTSAFT STSFRLRTKS SFDSISFSSS TPFSASSLLL HTSYTKRNHR CFSVQSNAEV VTEPQSKITH KVYFDISVGN
101: PVGKLAGRIV IGLYGDDVPQ TVENFRALCT GEKGFGYKGS TFHRVIRDFM IQGGDFEKGN GTGGKSVYGR TFKDENFKLS HVGPGVLSMA NAGPNTNGSQ
201: FFICTIKTSW LDGRHVVFGQ VIEGMEVVKL IEEQETDRGD RPRKKVVIAD CGQLPMSEA

Arabidopsis Description

PNSL5Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UN74]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.