Factsheet for Bra007214.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56070.1	Bra018296.1-P	AT3G51920.1	17360592
AT3G56070.1	Bra033467.1-P	AT3G51920.1	17360592
AT3G56070.1	Bra002368.1-P	AT5G21274.1	17360592
AT3G56070.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27248	Canola	cytosol	100.0	100.0
AT3G56070.1	Thale cress	cytosol	87.91	90.91
KRG97056	Soybean	cytosol	80.22	83.43
KRH68802	Soybean	cytosol	79.67	82.86
VIT_14s0081g00700.t01	Wine grape	cytosol	79.12	82.76
PGSC0003DMT400073838	Potato	cytosol	78.57	81.71
Solyc11g006070.1.1	Tomato	cytosol, extracellular, unclear	67.58	80.39
EER96387	Sorghum	cytosol	76.92	80.0
Os09t0571400-01	Rice	mitochondrion	75.82	77.09
TraesCS4D01G001600.1	Wheat	mitochondrion	75.27	76.54
Bra011568.1-P	Field mustard	cytosol	71.43	76.02
TraesCS4A01G312600.1	Wheat	cytosol, mitochondrion, plastid	74.73	75.56
Bra037296.1-P	Field mustard	cytosol	70.33	74.85
Bra033574.1-P	Field mustard	cytosol	70.33	74.42
Bra010728.1-P	Field mustard	cytosol	69.78	73.84
HORVU4Hr1G000910.3	Barley	cytosol	75.27	68.84
Bra002623.1-P	Field mustard	cytosol	63.19	58.67
Bra006748.1-P	Field mustard	endoplasmic reticulum	64.29	58.21
Bra018353.1-P	Field mustard	endoplasmic reticulum	63.74	57.71
Bra007200.1-P	Field mustard	endoplasmic reticulum	61.54	50.0
Bra005088.1-P	Field mustard	plastid	54.95	49.02
Bra017105.1-P	Field mustard	plastid	54.95	48.31
Bra007655.1-P	Field mustard	plastid	60.44	42.8
Bra014414.1-P	Field mustard	plastid	59.89	42.25
Bra011574.1-P	Field mustard	endoplasmic reticulum	51.65	41.96
Bra034667.1-P	Field mustard	endoplasmic reticulum	51.1	41.7
Bra006182.1-P	Field mustard	plastid	56.04	39.69
Bra015237.1-P	Field mustard	cytosol	57.69	29.09
Bra040447.1-P	Field mustard	nucleus	59.89	20.6
Bra011346.1-P	Field mustard	nucleus	49.45	11.66

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	EnsemblPlantsGene:Bra007214	EnsemblPlants:Bra007214.1	EnsemblPlants:Bra007214.1-P	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005794	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016853	GO:GO:0019538	GO:GO:0046686	InterPro:IPR002130	InterPro:IPR029000	UniProt:M4CSM2
PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF396	SUPFAM:SSF50891	UniParc:UPI000189D7C2	SEG:seg	:	:

Description

AT3G56070 (E=1e-083) ROC2 | ROC2 (ROTAMASE CYCLOPHILIN 2); cyclosporin A binding / peptidyl-prolyl cis-trans isomerase

Coordinates

chrA09:-:28030747..28031295

Molecular Weight (calculated)

19604.4 Da

IEP (calculated)

7.964

GRAVY (calculated)

-0.290

Length

182 amino acids

Sequence
(BLAST)

001: MANPKVFFDI LIGKMKAGRV VMELFADVTP RTADNFRALC TGEKGIGQAG KALHYKGSAF HRIIPGFMCQ GGDFTRGNGT GGESIYGAKF QDENFKLKHT
101: GPGILSMANS GPNTNGSQFF ICTDKTAWLD GKHVVFGKVV DGYNVVKAME KVGSERGVTS EPVVIEDCGE IKNETSEVSN KE

Best Arabidopsis Sequence Match ( AT3G56070.2 )
(BLAST)

001: MANPKVFFDI LIGKMKAGRV VMELFADVTP RTANNFRALC TGENGIGKAG KALHYKGSAF HRIIPGFMCQ GGDFTRGNGT GGESIYGSKF EDENFKLKHT
101: GPGILSMANS GPNTNGSQFF ICTEKTSWLD GKHVVFGKVV DGYNVVKAME DVGSDMGNPS ERVVIEDCGE LKNPSS

Arabidopsis Description

CYP19-3Peptidyl-prolyl cis-trans isomerase CYP19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q38867]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.