Factsheet for VIT_14s0081g00700.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56070.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT3G56070.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97056	Soybean	cytosol	87.36	86.86
KRH68802	Soybean	cytosol	86.21	85.71
EER96387	Sorghum	cytosol	81.03	80.57
PGSC0003DMT400073838	Potato	cytosol	81.03	80.57
Solyc11g006070.1.1	Tomato	cytosol, extracellular, unclear	70.69	80.39
AT3G56070.1	Thale cress	cytosol	81.03	80.11
Os09t0571400-01	Rice	mitochondrion	81.61	79.33
Bra007214.1-P	Field mustard	cytosol	82.76	79.12
CDY27248	Canola	cytosol	82.76	79.12
VIT_18s0001g14400.t01	Wine grape	extracellular	77.01	77.91
CDX72175	Canola	cytosol	81.61	77.6
VIT_03s0038g01930.t01	Wine grape	cytosol	74.71	75.58
TraesCS4A01G312600.1	Wheat	cytosol, mitochondrion, plastid	78.16	75.56
TraesCS4D01G001600.1	Wheat	mitochondrion	77.59	75.42
HORVU4Hr1G000910.3	Barley	cytosol	77.01	67.34
VIT_06s0004g06610.t01	Wine grape	endoplasmic reticulum	67.24	58.5
VIT_13s0084g00620.t01	Wine grape	cytosol	56.32	51.85
VIT_13s0067g00870.t01	Wine grape	endoplasmic reticulum	63.79	48.68
VIT_03s0038g02200.t01	Wine grape	endoplasmic reticulum	57.47	44.84
VIT_07s0005g02410.t01	Wine grape	plastid	60.34	41.5
VIT_01s0146g00110.t01	Wine grape	plastid	61.49	40.84
VIT_03s0063g01030.t01	Wine grape	cytosol	60.92	29.36
VIT_00s0179g00290.t01	Wine grape	endoplasmic reticulum, golgi	64.94	15.54
VIT_04s0008g05090.t01	Wine grape	nucleus	56.32	12.31

Protein Annotations

EntrezGene:100261571	wikigene:100261571	MapMan:18.12.1	Gene3D:2.40.100.10	UniProt:A5B709	EMBL:AM448871
ProteinID:CAN61038	ProteinID:CAN61038.1	ProteinID:CCB58691	ProteinID:CCB58691.1	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EMBL:FN596256	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	EntrezGene:LOC100261571	wikigene:LOC100261571
PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF403	SUPFAM:SSF50891	UniParc:UPI0001520389	ArrayExpress:VIT_14s0081g00700	EnsemblPlantsGene:VIT_14s0081g00700	EnsemblPlants:VIT_14s0081g00700.t01
unigene:Vvi.17458	RefSeq:XP_003633689	RefSeq:XP_003633689.1	RefSeq:XP_010660113.1	SEG:seg	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A5B709]

Coordinates

chr14:+:9060992..9061520

Molecular Weight (calculated)

18774.7 Da

IEP (calculated)

7.981

GRAVY (calculated)

-0.189

Length

174 amino acids

Sequence
(BLAST)

001: MSNPKVFFDI LVGKMKAGRI VMELFADVTP KTAENFRALC TGEKGIGMSG KPLHYKGSAF HRIIPNFMCQ GGDFTRGNGT GGESIHGMKF ADENFTMKHT
101: GPGVLSMANA GPNTNGSQFF ICTTKTPWLD GKHVVFGKVV DGYSVVKEME KVGTDSGTTL EKVVIEDCGQ IVEN

Best Arabidopsis Sequence Match ( AT3G56070.2 )
(BLAST)

001: MANPKVFFDI LIGKMKAGRV VMELFADVTP RTANNFRALC TGENGIGKAG KALHYKGSAF HRIIPGFMCQ GGDFTRGNGT GGESIYGSKF EDENFKLKHT
101: GPGILSMANS GPNTNGSQFF ICTEKTSWLD GKHVVFGKVV DGYNVVKAME DVGSDMGNPS ERVVIEDCGE LKNPSS

Arabidopsis Description

CYP19-3Peptidyl-prolyl cis-trans isomerase CYP19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q38867]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.