Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g006070.1.1 | Tomato | cytosol, extracellular, unclear | 85.71 | 98.04 |
| KRG97056 | Soybean | cytosol | 82.29 | 82.29 |
| KRH68802 | Soybean | cytosol | 81.71 | 81.71 |
| VIT_14s0081g00700.t01 | Wine grape | cytosol | 80.57 | 81.03 |
| Bra007214.1-P | Field mustard | cytosol | 81.71 | 78.57 |
| CDY27248 | Canola | cytosol | 81.71 | 78.57 |
| AT3G56070.1 | Thale cress | cytosol | 78.86 | 78.41 |
| EER96387 | Sorghum | cytosol | 77.71 | 77.71 |
| Os09t0571400-01 | Rice | mitochondrion | 78.29 | 76.54 |
| CDX72175 | Canola | cytosol | 80.0 | 76.5 |
| TraesCS4D01G001600.1 | Wheat | mitochondrion | 75.43 | 73.74 |
| TraesCS4A01G312600.1 | Wheat | cytosol, mitochondrion, plastid | 75.43 | 73.33 |
| PGSC0003DMT400011344 | Potato | cytosol | 70.86 | 72.09 |
| PGSC0003DMT400004125 | Potato | extracellular | 70.29 | 71.93 |
| HORVU4Hr1G000910.3 | Barley | cytosol | 76.0 | 66.83 |
| PGSC0003DMT400078234 | Potato | endoplasmic reticulum | 64.57 | 54.59 |
| PGSC0003DMT400013826 | Potato | cytosol, mitochondrion | 56.57 | 52.11 |
| PGSC0003DMT400015869 | Potato | cytosol | 53.14 | 48.44 |
| PGSC0003DMT400016955 | Potato | endoplasmic reticulum | 62.86 | 48.03 |
| PGSC0003DMT400013412 | Potato | extracellular, plastid | 57.71 | 40.73 |
| PGSC0003DMT400066358 | Potato | cytosol | 58.86 | 28.45 |
| PGSC0003DMT400026079 | Potato | cytosol | 57.71 | 27.98 |
| PGSC0003DMT400049782 | Potato | nucleus | 65.71 | 17.48 |
| PGSC0003DMT400059575 | Potato | nucleus | 16.0 | 4.01 |
Protein Annotations
| EntrezGene:102605090 | MapMan:18.12.1 | Gene3D:2.40.100.10 | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS |
| InterPro:Cyclophilin-type_PPIase_dom | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005794 | GO:GO:0006457 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 |
| GO:GO:0046686 | InterPro:IPR002130 | InterPro:IPR029000 | UniProt:M1CSR8 | PFAM:PF00160 | EnsemblPlantsGene:PGSC0003DMG400028689 |
| PGSC:PGSC0003DMG400028689 | EnsemblPlants:PGSC0003DMT400073838 | PIRSF:PIRSF001467 | PRINTS:PR00153 | ScanProsite:PS00170 | PFscan:PS50072 |
| PANTHER:PTHR11071 | PANTHER:PTHR11071:SF403 | SUPFAM:SSF50891 | UniParc:UPI00029630DD | RefSeq:XP_006350958.1 | SEG:seg |
Description
Peptidyl-prolyl cis-trans isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400028689]
Coordinates
chr11:+:6607771..6608298
Molecular Weight (calculated)
18848.6 Da
IEP (calculated)
7.965
GRAVY (calculated)
-0.206
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKNPKVFFD ILIGKAKAGR VVMELFKDKT PNTAENFRAL CTGEKGIGQL GKPLHYKGSG FHRIIPQFMC QGGDFTRGNG TGGESIYGTK FADENFSVMH
101: TIPGLLSMAN SGRNTNGSQF FITTVATPWL DGKHVVFGKV VDGYSVVEAM EKVGSDSGKT SCPVLIEDCG EITEN
101: TIPGLLSMAN SGRNTNGSQF FITTVATPWL DGKHVVFGKV VDGYSVVEAM EKVGSDSGKT SCPVLIEDCG EITEN
001: MANPKVFFDI LIGKMKAGRV VMELFADVTP RTANNFRALC TGENGIGKAG KALHYKGSAF HRIIPGFMCQ GGDFTRGNGT GGESIYGSKF EDENFKLKHT
101: GPGILSMANS GPNTNGSQFF ICTEKTSWLD GKHVVFGKVV DGYNVVKAME DVGSDMGNPS ERVVIEDCGE LKNPSS
101: GPGILSMANS GPNTNGSQFF ICTEKTSWLD GKHVVFGKVV DGYNVVKAME DVGSDMGNPS ERVVIEDCGE LKNPSS
Arabidopsis Description
CYP19-3Peptidyl-prolyl cis-trans isomerase CYP19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q38867]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.