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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
  • endoplasmic reticulum 1
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:endoplasmic reticulum, extracellular, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:endoplasmic reticulum, extracellular, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 20363867
extracellular: 22364583
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc07g047770.2.1
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G13120.1 Solyc08g078700.2.1 AT4G25200.1 21798944
AT5G13120.1 Solyc07g047770.2.1 AT5G35750.1 18642946
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400013412 Potato extracellular, plastid 96.37 96.37
VIT_01s0146g00110.t01 Wine grape plastid 74.6 70.61
EES17522 Sorghum plastid 70.56 70.28
Zm00001d011104_P001 Maize plastid 68.15 68.15
Zm00001d035761_P001 Maize plastid 68.95 68.13
Os05t0103200-01 Rice plastid 68.15 67.6
GSMUA_Achr2P21150_001 Banana plastid 66.94 66.67
KRH36359 Soybean nucleus, plastid 67.34 66.53
TraesCS1A01G007500.1 Wheat golgi 65.73 66.53
TraesCS1B01G011100.1 Wheat plastid 65.32 66.12
TraesCS1D01G000800.2 Wheat plastid 64.92 65.71
KRG93128 Soybean nucleus, plastid 66.13 64.82
Solyc01g111170.2.1 Tomato extracellular, nucleus 44.35 64.33
Solyc10g054910.1.1 Tomato extracellular, unclear 43.55 62.79
CDX70495 Canola plastid 64.52 62.26
CDX78508 Canola plastid 64.11 62.11
Bra006182.1-P Field mustard plastid 64.11 61.87
AT5G13120.1 Thale cress plastid 64.11 61.39
GSMUA_Achr6P16580_001 Banana endoplasmic reticulum, mitochondrion 65.73 60.15
HORVU1Hr1G000710.1 Barley mitochondrion, plastid 65.32 57.65
Solyc11g006070.1.1 Tomato cytosol, extracellular, unclear 35.48 57.52
Solyc06g076970.2.1 Tomato nucleus 44.76 53.62
Solyc01g096520.2.1 Tomato cytosol, nucleus, plastid 38.31 50.0
Solyc06g051650.2.1 Tomato endoplasmic reticulum 45.16 49.78
Solyc01g111360.2.1 Tomato endoplasmic reticulum 39.92 43.42
Solyc01g108340.2.1 Tomato cytosol 40.73 27.9
Solyc02g090480.2.1 Tomato cytosol 39.52 27.15
Solyc09g065720.2.1 Tomato nucleus 41.53 15.61
Solyc08g067090.2.1 Tomato nucleus 27.02 8.28
Protein Annotations
MapMan:1.1.8.1.4.5MapMan:18.12.1Gene3D:2.40.100.10InterPro:Cyclophilin-like_dom_sfInterPro:Cyclophilin-type_PPIaseInterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_domGO:GO:0000413GO:GO:0003674GO:GO:0003755GO:GO:0003824GO:GO:0006457
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016853GO:GO:0019538
InterPro:IPR002130InterPro:IPR029000UniProt:K4ATJ4PFAM:PF00160PRINTS:PR00153ScanProsite:PS00170
PFscan:PS50072PANTHER:PTHR11071PANTHER:PTHR11071:SF383SUPFAM:SSF50891EnsemblPlantsGene:Solyc01g009990.2EnsemblPlants:Solyc01g009990.2.1
UniParc:UPI00027618F9SEG:seg::::
Description
Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:K4ATJ4]
Coordinates
chr1:+:4594127..4598093
Molecular Weight (calculated)
26536.6 Da
IEP (calculated)
9.606
GRAVY (calculated)
-0.175
Length
248 amino acids
Sequence
(BLAST)
001: MAATFASVSN LGSISVPRVA NPTYAAYPKL LKSSFSSSSL FGGSLRLDTS SNRSVHKKTG GSSGSIQAAV EVADLQSKVT NKVYFDISIG NPVGKLAGRI
101: VIGLYGDDVP QTAENFRALC TGEKGFGFKD SAFHRVIKDF MIQGGDFDKG NGTGGKSIYG RTFKDENFKL VHTGPGIVSM ANAGPNTNGS QFFICTVKTP
201: WLDQKHVVFG QVLEGMDIVK LIESQETDRG DRPRKRVVIS DCGELPIV
Best Arabidopsis Sequence Match ( AT5G13120.2 )
(BLAST)
001: MATLSMTLSL SAPPRRLSPI NTSAFTSTSF RLRTKSSFDS ISFSSSTPFS ASSLLLHTSY TKRNHRCFSV QSNAEVVTEP QSKITHKVYF DISVGNPVGK
101: LAGRIVIGLY GDDVPQTVEN FRALCTGEKG FGYKGSTFHR VIRDFMIQGG DFEKGNGTGG KSVYGRTFKD ENFKLSHVGP GVLSMANAGP NTNGSQFFIC
201: TIKTSWLDGR HVVFGQVIEG MEVVKLIEEQ ETDRGDRPRK KVVIADCGQL PMSEA
Arabidopsis Description
PNSL5Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UN74]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.