Factsheet for GSMUA_Achr6P16580_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

plastid 4
extracellular 3
endoplasmic reticulum 5
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum, extracellular, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P22740_001
GSMUA_Achr4P17470_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13120.1	GSMUA_Achr10P...	AT4G25200.1	21798944
AT5G13120.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT5G13120.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT5G13120.1	GSMUA_AchrUn_...	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P21150_001	Banana	plastid	63.84	69.48
EES17522	Sorghum	plastid	62.73	68.27
Zm00001d035761_P001	Maize	plastid	63.1	68.13
Zm00001d011104_P001	Maize	plastid	61.99	67.74
TraesCS1A01G007500.1	Wheat	golgi	60.52	66.94
TraesCS1B01G011100.1	Wheat	plastid	60.15	66.53
Solyc01g009990.2.1	Tomato	plastid	60.15	65.73
TraesCS1D01G000800.2	Wheat	plastid	59.41	65.71
Os05t0103200-01	Rice	plastid	60.52	65.6
PGSC0003DMT400013412	Potato	extracellular, plastid	59.04	64.52
KRG93128	Soybean	nucleus, plastid	59.04	63.24
KRH36359	Soybean	nucleus, plastid	58.3	62.95
GSMUA_Achr3P12630_001	Banana	plasma membrane, unclear	35.06	62.91
VIT_01s0146g00110.t01	Wine grape	plastid	59.41	61.45
CDX78508	Canola	plastid	54.98	58.2
HORVU1Hr1G000710.1	Barley	mitochondrion, plastid	59.78	57.65
Bra006182.1-P	Field mustard	plastid	54.61	57.59
GSMUA_Achr10P...	Banana	endoplasmic reticulum	41.7	56.78
GSMUA_Achr7P17320_001	Banana	endoplasmic reticulum	43.54	56.46
CDX70495	Canola	plastid	53.51	56.42
AT5G13120.1	Thale cress	plastid	53.87	56.37
GSMUA_Achr7P04880_001	Banana	cytosol	39.85	55.67
GSMUA_Achr2P00020_001	Banana	plastid	35.42	45.93
GSMUA_Achr1P07610_001	Banana	endoplasmic reticulum	36.53	45.83
GSMUA_Achr5P05580_001	Banana	cytosol	39.11	27.04
GSMUA_Achr8P23380_001	Banana	cytosol	38.38	26.94
GSMUA_Achr9P28600_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	36.53	14.58
GSMUA_Achr5P03050_001	Banana	nucleus	32.84	12.82
GSMUA_Achr2P15900_001	Banana	nucleus	36.16	11.79
GSMUA_Achr10P...	Banana	nucleus	34.32	11.18

Protein Annotations

MapMan:1.1.8.1.4.5	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr6G16580_001	EnsemblPlants:GSMUA_Achr6P16580_001	EnsemblPlants:GSMUA_Achr6T16580_001	InterPro:IPR002130	InterPro:IPR029000	UniProt:M0T7K6
PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF383
SUPFAM:SSF50891	TMHMM:TMhelix	UniParc:UPI000294805A	SEG:seg	:	:

Description

peptidyl-prolyl cis-trans isomerase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G16580_001]

Coordinates

chr6:+:11035572..11041287

Molecular Weight (calculated)

29320.2 Da

IEP (calculated)

9.745

GRAVY (calculated)

-0.054

Length

271 amino acids

Sequence
(BLAST)

001: MIRSVCLWTK RTCSFISIGF TLSLLMAASL PFLASVRPAI VAGSRSLGRT PLLSPYRAFL DSRKFSSAAA LSCPAGLFPS PSSRSTARFS TSPRAELKVS
101: DLQSTVTTKV FFDISIGGHV GRIVIGLYGD DVPQTAENFR ALCTGEKGFG YKGSAFHRVI KDFMIQGGDF DQGNGTGGKS IYGRTFKDEN FKLTHLGPGI
201: VSMANAGPDT NGSQFFICTV KTPWLDKRHV VFGQVLEGME VVRQIESQET DRGDRPKKNV VISDCGELPS V

Best Arabidopsis Sequence Match ( AT5G13120.2 )
(BLAST)

001: MATLSMTLSL SAPPRRLSPI NTSAFTSTSF RLRTKSSFDS ISFSSSTPFS ASSLLLHTSY TKRNHRCFSV QSNAEVVTEP QSKITHKVYF DISVGNPVGK
101: LAGRIVIGLY GDDVPQTVEN FRALCTGEKG FGYKGSTFHR VIRDFMIQGG DFEKGNGTGG KSVYGRTFKD ENFKLSHVGP GVLSMANAGP NTNGSQFFIC
201: TIKTSWLDGR HVVFGQVIEG MEVVKLIEEQ ETDRGDRPRK KVVIADCGQL PMSEA

Arabidopsis Description

PNSL5Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UN74]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.