Factsheet for GSMUA_Achr3P12630_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, unclear

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 20177697
plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	86.09	75.58
Bra011568.1-P	Field mustard	cytosol	84.77	74.85
VIT_18s0001g14400.t01	Wine grape	extracellular	84.77	74.42
KRH29120	Soybean	endoplasmic reticulum, nucleus	84.77	74.42
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	84.11	73.84
KRH51416	Soybean	cytosol	84.11	73.84
Zm00001d050635_P001	Maize	plastid	83.44	73.68
CDX69094	Canola	cytosol	83.44	73.26
Solyc10g054910.1.1	Tomato	extracellular, unclear	83.44	73.26
PGSC0003DMT400011344	Potato	cytosol	83.44	73.26
PGSC0003DMT400004125	Potato	extracellular	82.78	73.1
Solyc01g111170.2.1	Tomato	extracellular, nucleus	81.46	71.93
Zm00001d016661_P001	Maize	plastid	81.46	71.51
Zm00001d016660_P001	Maize	cytosol	81.46	71.51
VIT_03s0038g01930.t01	Wine grape	cytosol	81.46	71.51
Os02t0121300-01	Rice	extracellular	80.79	70.93
EES05164	Sorghum	cytosol	80.79	70.93
EES04388	Sorghum	cytosol	80.13	70.76
AT4G34870.1	Thale cress	cytosol	80.13	70.35
TraesCS6D01G066700.1	Wheat	golgi, plastid	79.47	70.18
TraesCS6B01G093100.2	Wheat	cytosol	79.47	70.18
TraesCS6A01G068900.1	Wheat	cytosol	79.47	70.18
TraesCS6A01G405900.1	Wheat	cytosol	71.52	64.67
HORVU6Hr1G012570.2	Barley	cytosol	79.47	58.25
HORVU6Hr1G092950.1	Barley	endoplasmic reticulum, golgi	72.85	58.2
GSMUA_Achr10P...	Banana	endoplasmic reticulum	69.54	52.76
GSMUA_Achr7P17320_001	Banana	endoplasmic reticulum	70.86	51.2
TraesCS6B01G450300.1	Wheat	cytosol	70.2	48.4
GSMUA_Achr7P04880_001	Banana	cytosol	60.93	47.42
TraesCS6B01G450400.1	Wheat	cytosol	65.56	45.21
TraesCS6A01G405800.1	Wheat	cytosol	72.85	44.53
GSMUA_Achr2P00020_001	Banana	plastid	57.62	41.63
GSMUA_Achr1P07610_001	Banana	endoplasmic reticulum	56.29	39.35
GSMUA_Achr2P21150_001	Banana	plastid	62.25	37.75
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	62.91	35.06
GSMUA_Achr8P23380_001	Banana	cytosol	64.24	25.13
GSMUA_Achr5P05580_001	Banana	cytosol	63.58	24.49
GSMUA_Achr9P28600_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	63.58	14.14
GSMUA_Achr5P03050_001	Banana	nucleus	62.25	13.54
GSMUA_Achr2P15900_001	Banana	nucleus	61.59	11.19
GSMUA_Achr10P...	Banana	nucleus	60.26	10.94

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005794
GO:GO:0005829	GO:GO:0005886	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0019538
GO:GO:0048046	EnsemblPlantsGene:GSMUA_Achr3G12630_001	EnsemblPlants:GSMUA_Achr3P12630_001	EnsemblPlants:GSMUA_Achr3T12630_001	InterPro:IPR002130	InterPro:IPR029000
UniProt:M0SE30	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072
PANTHER:PTHR11071	PANTHER:PTHR11071:SF403	SUPFAM:SSF50891	UniParc:UPI000296E89D	SEG:seg	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:GMGC_GENE;Acc:GSMUA_Achr3G12630_001]

Coordinates

chr3:+:9363253..9364122

Molecular Weight (calculated)

16054.1 Da

IEP (calculated)

8.493

GRAVY (calculated)

-0.256

Length

151 amino acids

Sequence
(BLAST)

001: MELYADVTPK TAENFRALCT GEKGMGRCGK PLHYKGSSFH RVIPGFMCQG GDFTRGNGTG GESIYGEKFA DENFVKKHTG PGVLSMANAG KHTNGSQFFI
101: CTAQTSWLDG KHVVFGRVVE GLEVVKAIEA VGSQSGTTKK TVVVADCGQL S

Best Arabidopsis Sequence Match ( AT2G16600.1 )
(BLAST)

001: MATNPKVYFD MTVGGKSAGR IVMELYADTT PETAENFRAL CTGERGIGKQ GKPLHYKGSS FHRVIPKFMC QGGDFTAGNG TGGESIYGSK FKDENFIKKH
101: TGPGILSMAN AGANTNGSQF FICTEKTSWL DGKHVVFGQV VEGLNVVRDI EKVGSDSGRT SKPVVIADCG QIS

Arabidopsis Description

CYP19-1Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VVJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.