CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
extracellular 1
endoplasmic reticulum 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008209_P001	Maize	plastid	93.8	80.78
TraesCS3D01G159000.1	Wheat	plastid	76.86	77.5
TraesCS3B01G178000.1	Wheat	plastid	76.86	77.5
TraesCS3A01G151100.1	Wheat	plastid	76.03	76.67
HORVU3Hr1G030750.1	Barley	plastid	74.79	75.42
EES04388	Sorghum	cytosol	45.45	64.33
VIT_07s0005g02410.t01	Wine grape	plastid	66.12	63.24
KRG96627	Soybean	nucleus, plastid	66.53	61.92
EES05164	Sorghum	cytosol	43.8	61.63
EER96387	Sorghum	cytosol	42.56	58.86
CDX76611	Canola	plastid	60.33	57.71
CDY58761	Canola	plastid	61.16	57.36
CDX93994	Canola	plastid	61.57	57.09
Bra014414.1-P	Field mustard	plastid	59.92	56.2
CDY11395	Canola	plastid	59.92	56.2
Bra007655.1-P	Field mustard	plastid	59.5	56.03
KRH33684	Soybean	nucleus, plastid	60.74	55.89
KRH68358	Soybean	plastid	53.72	55.08
EES17522	Sorghum	plastid	53.72	52.21
OQU77068	Sorghum	endoplasmic reticulum	44.63	50.7
EER90660	Sorghum	plastid	41.74	50.25
OQU77069	Sorghum	mitochondrion	44.63	49.09
EER91725	Sorghum	cytosol	37.19	47.37
AT3G62030.2	Thale cress	endoplasmic reticulum	61.16	47.28
EER97099	Sorghum	endoplasmic reticulum	41.32	46.3
EER88931	Sorghum	endoplasmic reticulum	41.74	45.7
EER88932	Sorghum	endoplasmic reticulum	40.91	44.8
EES05845	Sorghum	cytosol	42.56	26.01
EER88080	Sorghum	cytosol	41.74	25.96
EER95944	Sorghum	nucleus	38.43	14.35
OQU84603	Sorghum	nucleus	33.47	9.74

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	EntrezGene:8054689	UniProt:C5XHY3	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlants:EES00602	ProteinID:EES00602	ProteinID:EES00602.1	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006457	GO:GO:0006464
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009535
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628
GO:GO:0009642	GO:GO:0009651	GO:GO:0009719	GO:GO:0009735	GO:GO:0009737	GO:GO:0009941
GO:GO:0009987	GO:GO:0010555	GO:GO:0016020	GO:GO:0016853	GO:GO:0019344	GO:GO:0019538
GO:GO:0022626	GO:GO:0031977	GO:GO:0042742	GO:GO:0048046	InterPro:IPR002130	InterPro:IPR029000
PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF383	EnsemblPlantsGene:SORBI_3003G136400	SUPFAM:SSF50891	UniParc:UPI0001A843D1	RefSeq:XP_002455482.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:12986720..12992135

Molecular Weight (calculated)

25904.9 Da

IEP (calculated)

7.771

GRAVY (calculated)

-0.155

Length

242 amino acids

Sequence
(BLAST)

001: MASMPAVSAT SVLAPAPASP RSQLCYSTET RRGALSLRPA RAIPALRLVG HRDARGAVVV RAAAAEGAVD LQAKVTTKCF FDVEVGGEPA GRIVIGLFGE
101: VVPKTVDNFR ALCTGEKGYG YKGCSFHRII KDFMIQGGDF QENNGTGGRS IYGESFDDEN FTLKHVGPGV LSMANAGPNT NGSQFFICTV KTPWLDNRHV
201: VFGHVLEGMD VVKQLESQET SRSDTPKQPC RIVNCGELPL DS

Best Arabidopsis Sequence Match ( AT3G62030.3 )
(BLAST)

001: MASSSSMQMV HTSRSIAQIG FGVKSQLVSA NRTTQSVCFG ARSSGIALSS RLHYASPIKQ FSGVYATTKH QRTACVKSMA AEEEVIEPQA KVTNKVYFDV
101: EIGGEVAGRI VMGLFGEVVP KTVENFRALC TGEKKYGYKG SSFHRIIKDF MIQGGDFTEG NGTGGISIYG AKFEDENFTL KHTGPGILSM ANAGPNTNGS
201: QFFICTVKTS WLDNKHVVFG QVIEGMKLVR TLESQETRAF DVPKKGCRIY ACGELPLDA

Arabidopsis Description

ROC4Rotamase CYP 4 [Source:UniProtKB/TrEMBL;Acc:F4IX26]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.