Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 7
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52123 | Canola | endoplasmic reticulum | 97.06 | 97.06 |
| CDX80340 | Canola | endoplasmic reticulum | 97.06 | 97.06 |
| CDY61026 | Canola | endoplasmic reticulum | 91.67 | 93.03 |
| CDX71155 | Canola | endoplasmic reticulum | 91.18 | 92.54 |
| Bra006748.1-P | Field mustard | endoplasmic reticulum | 91.18 | 92.54 |
| Bra002623.1-P | Field mustard | cytosol | 88.24 | 91.84 |
| KRH30309 | Soybean | endoplasmic reticulum | 86.76 | 86.76 |
| KRG98290 | Soybean | endoplasmic reticulum | 86.76 | 86.76 |
| AT2G29960.1 | Thale cress | endoplasmic reticulum | 82.35 | 83.58 |
| AT4G38740.1 | Thale cress | cytosol | 57.35 | 68.02 |
| AT3G56070.1 | Thale cress | cytosol | 58.33 | 67.61 |
| GSMUA_Achr7P04880_001 | Banana | cytosol | 64.22 | 67.53 |
| AT2G16600.1 | Thale cress | cytosol | 56.86 | 67.05 |
| AT2G21130.1 | Thale cress | cytosol | 56.37 | 66.09 |
| Os06t0708400-01 | Rice | plasma membrane | 65.69 | 64.42 |
| AT4G34870.1 | Thale cress | cytosol | 53.43 | 63.37 |
| OQU77068 | Sorghum | endoplasmic reticulum | 65.69 | 62.91 |
| AT3G55920.1 | Thale cress | endoplasmic reticulum | 69.12 | 61.84 |
| EER88931 | Sorghum | endoplasmic reticulum | 63.24 | 58.37 |
| EER88932 | Sorghum | endoplasmic reticulum | 62.75 | 57.92 |
| AT4G34960.1 | Thale cress | endoplasmic reticulum | 55.88 | 50.89 |
| AT2G38730.1 | Thale cress | cytosol | 46.08 | 47.24 |
| AT5G13120.1 | Thale cress | plastid | 56.37 | 44.4 |
| AT3G62030.2 | Thale cress | endoplasmic reticulum | 59.8 | 38.98 |
| Zm00001d014731_P017 | Maize | endoplasmic reticulum, vacuole | 51.47 | 35.47 |
| AT2G15790.1 | Thale cress | cytosol | 49.02 | 27.7 |
| AT3G63400.4 | Thale cress | nucleus | 51.96 | 18.6 |
| AT4G32420.6 | Thale cress | nucleus | 42.65 | 10.39 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | EntrezGene:835985 | UniProt:A0A178UBF4 | ProteinID:AED97088.1 | EMBL:AF192490 |
| ArrayExpress:AT5G58710 | EnsemblPlantsGene:AT5G58710 | RefSeq:AT5G58710 | TAIR:AT5G58710 | RefSeq:AT5G58710-TAIR-G | EnsemblPlants:AT5G58710.1 |
| TAIR:AT5G58710.1 | EMBL:AY048227 | EMBL:AY086471 | EMBL:AY094017 | Unigene:At.49190 | ProteinID:BAA97339.1 |
| InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom | GO:GO:0000413 | GO:GO:0003674 |
| GO:GO:0003755 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006457 | GO:GO:0006464 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 | GO:GO:0048364 | InterPro:IPR002130 | InterPro:IPR029000 |
| RefSeq:NP_200679.1 | ProteinID:OAO91000.1 | PFAM:PF00160 | PIRSF:PIRSF001467 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00153 | ScanProsite:PS00170 |
| PFscan:PS50072 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF384 | UniProt:Q9SP02 | Symbol:ROC7 | SUPFAM:SSF50891 |
| SignalP:SignalP-noTM | UniParc:UPI00000AB06A | SEG:seg | : | : | : |
Description
CYP20-1Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UBF4]
Coordinates
chr5:+:23717775..23719778
Molecular Weight (calculated)
21962.5 Da
IEP (calculated)
9.617
GRAVY (calculated)
-0.096
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSVTLLLW SLLLLGTLSA IQAKKSKENL KEITHKVYFD VEIDGKAAGR IVMGLFGKTV PKTVENFRAL CTGEKGIGKN GKALHYKGSS FHRIIPSFML
101: QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGFLSMAN AGQDTNGSQF FITTVTTSWL DGRHVVFGKV VTGMDVVYKV EAEGNQSGTP KSKVVIVDSG
201: ELPL
101: QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGFLSMAN AGQDTNGSQF FITTVTTSWL DGRHVVFGKV VTGMDVVYKV EAEGNQSGTP KSKVVIVDSG
201: ELPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.