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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 3
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_00s0125g00350.t01
VIT_00s0264g00030.t01
VIT_00s0271g00080.t01
VIT_00s0274g00040.t01
VIT_03s0038g01930.t01
VIT_04s0008g05330.t01
VIT_05s0029g00040.t01 nucleus
VIT_05s0094g01600.t01
VIT_06s0061g00810.t01
VIT_08s0007g02490.t01
VIT_09s0002g06660.t01
VIT_10s0003g04250.t01
VIT_11s0016g00830.t01
VIT_12s0035g01800.t01
VIT_12s0059g02150.t01
VIT_13s0320g00010.t01
VIT_14s0006g03230.t01
VIT_14s0108g00010.t01
VIT_14s0171g00330.t01
VIT_15s0021g01330.t01
VIT_15s0045g00310.t01
VIT_16s0098g01230.t01
VIT_17s0000g10190.t01
VIT_17s0053g00580.t01
VIT_18s0001g05530.t01
VIT_18s0001g05720.t01
VIT_18s0001g14270.t01
VIT_18s0001g14400.t01
VIT_18s0001g14540.t01
VIT_19s0093g00320.t01
VIT_19s0093g00350.t01
VIT_19s0093g00370.t01
VIT_19s0093g00400.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G47220.1 VIT_00s0125g00350.t01 AT1G04810.1 20706207
AT1G47220.1 VIT_18s0001g05720.t01 AT1G22300.1 20706207
AT1G47220.1 VIT_18s0001g05530.t01 AT1G35720.1 20706207
AT1G47220.1 VIT_12s0035g01800.t01 AT1G59750.1 20706207
AT1G47220.1 VIT_18s0001g14270.t01 AT1G75750.1 20706207
AT1G47220.1 VIT_10s0003g04250.t01 AT1G78380.1 20706207
AT1G47220.1 VIT_19s0093g00320.t01 AT1G78380.1 20706207
AT1G47220.1 VIT_19s0093g00350.t01 AT1G78380.1 20706207
AT1G47220.1 VIT_19s0093g00370.t01 AT1G78380.1 20706207
AT1G47220.1 VIT_19s0093g00400.t01 AT1G78380.1 20706207
AT1G47220.1 VIT_12s0059g02150.t01 AT2G05710.1 20706207
AT1G47220.1 VIT_06s0061g00810.t01 AT2G27960.1 20706207
AT1G47220.1 VIT_06s0061g00810.t01 AT2G27970.1 20706207
AT1G47220.1 VIT_05s0094g01600.t01 AT2G44160.1 20706207
AT1G47220.1 VIT_14s0108g00010.t01 AT3G01280.1 20706207
AT1G47220.1 VIT_08s0007g02490.t01 AT3G11630.1 20706207
AT1G47220.1 VIT_14s0171g00330.t01 AT3G27240.1 20706207
AT1G47220.1 VIT_15s0045g00310.t01 AT3G48750.1 20706207
AT1G47220.1 VIT_15s0021g01330.t01 AT4G09320.1 20706207
AT1G47220.1 VIT_00s0264g00030.t01 AT4G35830.1 20706207
AT1G47220.1 VIT_03s0038g01930.t01 AT4G38740.1 20706207
AT1G47220.1 VIT_18s0001g14400.t01 AT4G38740.1 20706207
AT1G47220.1 VIT_04s0008g05330.t01 AT5G11170.1 20706207
AT1G47220.1 VIT_09s0002g06660.t01 AT5G11170.1 20706207
AT1G47220.1 VIT_14s0006g03230.t01 AT5G38480.1 20706207
AT1G47220.1 VIT_16s0098g01230.t01 AT5G53560.1 20706207
AT5G43080.1 VIT_00s0271g00080.t01 AT1G55890.1 20706207
AT5G43080.1 VIT_00s0274g00040.t01 AT1G55890.1 20706207
AT5G43080.1 VIT_11s0016g00830.t01 AT2G05830.1 20706207
AT5G43080.1 VIT_17s0053g00580.t01 AT2G05830.1 20706207
AT5G43080.1 VIT_06s0061g00810.t01 AT2G27970.1 20706207
AT5G43080.1 VIT_13s0320g00010.t01 AT2G31920.1 20706207
AT5G43080.1 VIT_05s0029g00040.t01 AT2G32710.1 20018602
AT5G43080.1 VIT_15s0045g00310.t01 AT3G48750.1 20706207
AT5G43080.1 VIT_18s0001g14540.t01 AT4G16630.1 20706207
AT5G43080.1 VIT_17s0000g10190.t01 AT5G50320.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400030222 Potato nucleus 68.77 70.9
PGSC0003DMT400055428 Potato nucleus 70.41 69.84
Solyc12g088530.1.1 Tomato nucleus 67.4 69.49
OQU91386 Sorghum nucleus 49.59 69.35
Solyc04g078310.2.1 Tomato nucleus 70.41 69.27
KRH52056 Soybean nucleus 40.0 69.19
PGSC0003DMT400030176 Potato nucleus 66.85 68.54
Solyc12g088520.1.1 Tomato nucleus 66.58 68.45
Solyc12g088500.1.1 Tomato nucleus 65.21 67.23
Solyc12g088470.1.1 Tomato nucleus 66.3 67.22
CDY06752 Canola nucleus 50.96 65.26
CDY22369 Canola nucleus 60.82 63.25
AT5G43080.1 Thale cress nucleus 61.37 63.1
GSMUA_Achr10P... Banana nucleus 54.52 62.78
CDY66770 Canola nucleus 61.37 61.88
Bra033658.1-P Field mustard nucleus 60.0 61.52
Bra032220.1-P Field mustard nucleus 60.0 61.34
CDY17091 Canola nucleus 60.0 61.17
KRH61375 Soybean nucleus 54.79 61.16
CDY47596 Canola nucleus 60.82 61.16
CDY23653 Canola nucleus 59.73 61.06
KRH15427 Soybean nucleus, plastid 60.82 60.99
CDY17037 Canola nucleus, plastid 60.82 60.99
Bra040793.1-P Field mustard nucleus 60.55 60.88
TraesCS4D01G076900.1 Wheat nucleus 61.64 60.81
Bra040792.1-P Field mustard nucleus, plastid 60.55 60.71
CDY47595 Canola nucleus, plastid 61.64 60.65
CDY17039 Canola nucleus 60.27 60.61
CDY06757 Canola nucleus, plastid 60.27 60.61
Bra040753.1-P Field mustard nucleus, plastid 60.27 60.61
KRH05614 Soybean nucleus 60.27 59.95
TraesCS4B01G078300.1 Wheat nucleus 60.82 59.84
HORVU4Hr1G013320.1 Barley nucleus 61.1 59.79
AT1G47230.2 Thale cress nucleus, plastid 60.55 59.73
AT1G47210.2 Thale cress nucleus 60.55 59.41
KRH61369 Soybean nucleus 53.15 59.33
TraesCS4A01G236700.2 Wheat plastid 60.82 59.2
Bra040710.1-P Field mustard nucleus 59.73 58.76
GSMUA_Achr6P11130_001 Banana nucleus 62.74 58.57
KRH61371 Soybean nucleus 55.89 58.45
GSMUA_Achr2P21530_001 Banana cytosol, nucleus, plastid 45.75 58.39
VIT_03s0091g00280.t01 Wine grape nucleus 54.52 58.36
Zm00001d033365_P002 Maize nucleus 58.9 57.8
KRH52055 Soybean nucleus 56.44 57.54
KRH61373 Soybean nucleus, plastid 57.53 56.0
TraesCS5A01G072000.1 Wheat plastid 57.53 55.85
TraesCS5D01G084700.1 Wheat nucleus 57.81 55.82
TraesCS5B01G078200.1 Wheat plastid 57.53 55.7
Os12t0581800-01 Rice nucleus, plastid 58.63 55.58
Zm00001d013744_P001 Maize nucleus 53.97 55.18
AT1G47220.1 Thale cress nucleus 48.77 54.43
Zm00001d030849_P001 Maize nucleus 61.64 53.19
GSMUA_Achr2P21520_001 Banana nucleus 52.33 53.06
EES16237 Sorghum nucleus, plastid 61.92 52.8
Zm00001d041334_P001 Maize nucleus, plastid 59.73 49.89
TraesCS4D01G253200.1 Wheat nucleus 30.96 46.31
HORVU5Hr1G018820.2 Barley nucleus, plastid 57.53 46.26
TraesCS4B01G254000.1 Wheat nucleus 45.75 44.41
TraesCS4D01G253900.1 Wheat nucleus 45.48 43.68
TraesCS4A01G050700.1 Wheat nucleus 44.66 42.89
EER95303 Sorghum nucleus, plastid 42.47 40.68
VIT_18s0001g02080.t01 Wine grape nucleus, plastid 41.1 40.54
TraesCS4A01G051300.1 Wheat nucleus 38.08 40.52
TraesCS4B01G253100.1 Wheat nucleus 36.99 39.59
VIT_04s0008g04260.t01 Wine grape nucleus, plastid 43.29 39.4
HORVU4Hr1G069310.3 Barley nucleus 43.56 38.31
VIT_09s0002g05240.t01 Wine grape nucleus 47.95 35.71
Os03t0607600-00 Rice nucleus 56.71 34.05
VIT_18s0001g02060.t01 Wine grape plastid 45.75 33.74
Zm00001d048127_P001 Maize plastid 40.82 31.11
Os03t0208700-00 Rice nucleus 33.97 30.32
VIT_08s0040g00930.t01 Wine grape nucleus 32.88 26.49
VIT_06s0009g02090.t01 Wine grape nucleus 30.14 26.32
VIT_18s0001g14170.t01 Wine grape nucleus 30.14 24.94
VIT_13s0067g01420.t01 Wine grape nucleus 30.96 24.46
VIT_03s0038g02800.t01 Wine grape nucleus, plastid 28.22 24.29
Os03t0208800-00 Rice nucleus 18.36 16.88
VIT_19s0085g00690.t01 Wine grape nucleus 26.03 15.73
Protein Annotations
Gene3D:1.10.472.10EntrezGene:100250548wikigene:100250548MapMan:13.1.1.1.1EMBL:AM454754ProteinID:CAN76718
ProteinID:CAN76718.1ProteinID:CBI19446ProteinID:CBI19446.3InterPro:Cyclin-A_plantInterPro:Cyclin-likeInterPro:Cyclin-like_sf
InterPro:Cyclin_C-domInterPro:Cyclin_NUniProt:E0CPN3EMBL:FN595227GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634EntrezGene:LOC100250548wikigene:LOC100250548PFAM:PF00134PFAM:PF02984
PIRSF:PIRSF001771ScanProsite:PS00292PANTHER:PTHR10177PANTHER:PTHR10177:SF270SMART:SM00385SMART:SM01332
SUPFAM:SSF47954UniParc:UPI00015C7D76ArrayExpress:VIT_18s0001g09580EnsemblPlantsGene:VIT_18s0001g09580EnsemblPlants:VIT_18s0001g09580.t01RefSeq:XP_002285074
RefSeq:XP_002285074.2SEG:seg::::
Description
No Description!
Coordinates
chr18:+:7996302..7998796
Molecular Weight (calculated)
41342.1 Da
IEP (calculated)
9.263
GRAVY (calculated)
-0.282
Length
365 amino acids
Sequence
(BLAST)
001: MADQENSVRI TRAAKKRAAA AMAASDSLQL PPNKKRVVLG ELPNLSNVAA TPAAVPASGA QKQKFRPKKK EKVKAAVVAP DVGAKSDDPQ MCGPYATDIY
101: EYLHSMEMEP KRRPLHDYIE KVQKDVSHNM RGILVDWLVE VAEEYKLASD TLYLTISYID RFLSSKALNR QRLQLLGVSS MLIAAKYEEI SPPHVEDFCY
201: ITDNTYTKEE VVKMEADILK SLNFEMGNPT IKTFLRRFTR IAQENYKTPN LQLEFLVYYL AELSLLDYGC VKFLPSMVAA SVIFLSRFTL RPKTHPWCSS
301: LQHHSGYKPS ELKECVLIIH DLQLSRRGGS LVAVREKYKQ HKFKCVATLS SPSVIPVSYF EDIKE
Best Arabidopsis Sequence Match ( AT5G43080.1 )
(BLAST)
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
Arabidopsis Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.