Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g088520.1.1 | Tomato | nucleus | 81.92 | 81.69 |
| Solyc12g088500.1.1 | Tomato | nucleus | 78.81 | 78.81 |
| Solyc12g088470.1.1 | Tomato | nucleus | 79.94 | 78.61 |
| Solyc04g078310.2.1 | Tomato | nucleus | 73.73 | 70.35 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 69.49 | 67.4 |
| KRH52056 | Soybean | nucleus | 38.7 | 64.93 |
| CDY06752 | Canola | nucleus | 50.0 | 62.11 |
| OQU91386 | Sorghum | nucleus | 45.48 | 61.69 |
| CDY22369 | Canola | nucleus | 59.32 | 59.83 |
| Bra033658.1-P | Field mustard | nucleus | 58.47 | 58.15 |
| GSMUA_Achr10P... | Banana | nucleus | 51.98 | 58.04 |
| AT5G43080.1 | Thale cress | nucleus | 57.91 | 57.75 |
| CDY66770 | Canola | nucleus | 59.04 | 57.73 |
| KRH15427 | Soybean | nucleus, plastid | 59.32 | 57.69 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 58.76 | 57.3 |
| KRH05614 | Soybean | nucleus | 59.32 | 57.22 |
| CDY06757 | Canola | nucleus, plastid | 58.47 | 57.02 |
| AT1G47210.2 | Thale cress | nucleus | 59.89 | 56.99 |
| Bra032220.1-P | Field mustard | nucleus | 57.34 | 56.86 |
| CDY23653 | Canola | nucleus | 57.06 | 56.58 |
| CDY47596 | Canola | nucleus | 57.34 | 55.92 |
| Bra040793.1-P | Field mustard | nucleus | 57.06 | 55.65 |
| CDY17091 | Canola | nucleus | 56.21 | 55.59 |
| CDY17039 | Canola | nucleus | 56.78 | 55.37 |
| CDY17037 | Canola | nucleus, plastid | 56.21 | 54.67 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 57.06 | 54.59 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 56.78 | 54.32 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 43.79 | 54.2 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 55.65 | 54.12 |
| CDY47595 | Canola | nucleus, plastid | 56.5 | 53.91 |
| Bra040710.1-P | Field mustard | nucleus | 56.21 | 53.64 |
| KRH61375 | Soybean | nucleus | 49.44 | 53.52 |
| AT1G47220.1 | Thale cress | nucleus | 49.15 | 53.21 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 55.65 | 53.1 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 55.93 | 53.08 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 58.47 | 52.94 |
| KRH61369 | Soybean | nucleus | 48.59 | 52.6 |
| TraesCS4A01G236700.2 | Wheat | plastid | 55.37 | 52.27 |
| KRH52055 | Soybean | nucleus | 52.54 | 51.96 |
| KRH61371 | Soybean | nucleus | 50.85 | 51.58 |
| Zm00001d033365_P002 | Maize | nucleus | 53.67 | 51.08 |
| KRH61373 | Soybean | nucleus, plastid | 53.11 | 50.13 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 53.11 | 49.74 |
| Zm00001d013744_P001 | Maize | nucleus | 50.0 | 49.58 |
| Solyc10g049360.1.1 | Tomato | nucleus | 52.82 | 49.47 |
| TraesCS5A01G072000.1 | Wheat | plastid | 52.54 | 49.47 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 50.28 | 49.44 |
| TraesCS5B01G078200.1 | Wheat | plastid | 52.54 | 49.34 |
| Os12t0581800-01 | Rice | nucleus, plastid | 52.82 | 48.57 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 32.77 | 47.54 |
| Zm00001d030849_P001 | Maize | nucleus | 55.37 | 46.34 |
| EES16237 | Sorghum | nucleus, plastid | 55.93 | 46.26 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 53.39 | 43.25 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 43.79 | 41.22 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 52.82 | 41.19 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 38.98 | 40.23 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 42.94 | 40.0 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 38.14 | 39.59 |
| EER95303 | Sorghum | nucleus, plastid | 42.37 | 39.37 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 41.81 | 38.95 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 42.37 | 36.14 |
| Solyc06g065680.2.1 | Tomato | nucleus, plastid | 44.92 | 33.47 |
| Solyc11g005090.1.1 | Tomato | plastid | 44.92 | 32.45 |
| Solyc03g120440.1.1 | Tomato | nucleus, plastid | 41.53 | 32.1 |
| Os03t0607600-00 | Rice | nucleus | 51.41 | 29.93 |
| Zm00001d048127_P001 | Maize | plastid | 39.55 | 29.23 |
| Solyc02g061650.1.1 | Tomato | nucleus | 28.53 | 28.77 |
| Os03t0208700-00 | Rice | nucleus | 32.77 | 28.36 |
| Solyc04g082430.2.1 | Tomato | nucleus | 28.25 | 25.45 |
| Solyc06g073610.2.1 | Tomato | nucleus | 30.79 | 24.77 |
| Solyc03g032190.2.1 | Tomato | nucleus | 29.66 | 24.36 |
| Solyc01g009040.2.1 | Tomato | nucleus | 29.66 | 24.14 |
| Solyc10g078330.1.1 | Tomato | nucleus | 28.81 | 24.11 |
| Solyc02g082820.2.1 | Tomato | nucleus | 29.38 | 23.96 |
| Solyc12g094600.1.1 | Tomato | nucleus | 28.53 | 23.76 |
| Solyc10g080950.1.1 | Tomato | nucleus | 28.81 | 22.08 |
| Os03t0208800-00 | Rice | nucleus | 17.23 | 15.37 |
| Solyc07g066660.2.1 | Tomato | nucleus | 24.01 | 11.5 |
Protein Annotations
| EnsemblPlants:Solyc12g088530.1.1 | EnsemblPlantsGene:Solyc12g088530.1 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-A_plant | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF270 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000276AB5D | UniProt:K4DGS4 | MapMan:13.1.1.1.1 | : |
Description
No Description!
Coordinates
chr12:+:63853242..63855378
Molecular Weight (calculated)
40592.3 Da
IEP (calculated)
9.195
GRAVY (calculated)
-0.257
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQENFVRV TRLAKKRAAE AMVQQLQQPN KKRVVLGEIQ DLSNEGIIKS RKTIKRKVKR SVAEKDKESD VDVNLDDDPQ MCGAYASDIY DYFHQLEIEK
101: KRRPLPDYLE KVQKDVSANM RGVLVDWLVE VAEEYKLLSD TLYLTVSHID RFLSVNVIPR QRLQLLGVSS MLIAAKYEEI KPPHVKDFCY ITANTFTKKD
201: VVKMEASVLQ SLKFEMGSPT TKTFLRRFTR VAQEDVKNPD LQFEFLGYYL AELSLLDYNC VKFLPSLVAA AVIFLSRFTL HPKAHPWSLA LQRCSGYRAA
301: DLKECVLIVH DLQLSRRGST LAAVRDKYKL HKFKCVSTLS SPLEIPDSFF EGTV
101: KRRPLPDYLE KVQKDVSANM RGVLVDWLVE VAEEYKLLSD TLYLTVSHID RFLSVNVIPR QRLQLLGVSS MLIAAKYEEI KPPHVKDFCY ITANTFTKKD
201: VVKMEASVLQ SLKFEMGSPT TKTFLRRFTR VAQEDVKNPD LQFEFLGYYL AELSLLDYNC VKFLPSLVAA AVIFLSRFTL HPKAHPWSLA LQRCSGYRAA
301: DLKECVLIVH DLQLSRRGST LAAVRDKYKL HKFKCVSTLS SPLEIPDSFF EGTV
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
Arabidopsis Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.