Factsheet for Solyc12g098310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g107730.2.1	nucleus
Solyc03g118190.2.1
Solyc03g120440.1.1	nucleus
Solyc04g078310.2.1	nucleus
Solyc05g006050.2.1	endoplasmic reticulum
Solyc05g051410.2.1	nucleus
Solyc06g082630.2.1
Solyc06g082660.2.1
Solyc06g084060.2.1
Solyc07g054690.1.1
Solyc07g054950.1.1	nucleus
Solyc08g066330.1.1
Solyc09g065880.2.1
Solyc09g098280.2.1
Solyc11g010460.1.1	nucleus
Solyc11g040340.1.1
Solyc12g088470.1.1	nucleus
Solyc12g088500.1.1	nucleus
Solyc12g088520.1.1	nucleus
Solyc12g088530.1.1	nucleus
Solyc12g098680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32710.1	Solyc09g098280.2.1	AT1G10840.1	20706207
AT2G32710.1	Solyc12g098680.1.1	AT1G10840.1	20706207
AT2G32710.1	Solyc05g006050.2.1	AT1G70210.1	20407024
AT2G32710.1	Solyc11g040340.1.1	AT1G71380.1	20706207
AT2G32710.1	Solyc03g120440.1.1	AT1G80370.1	20407024
AT2G32710.1	Solyc08g066330.1.1	AT3G48750.1	11449057
AT2G32710.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT2G32710.1	Solyc06g084060.2.1	AT3G54650.1	18948957
AT2G32710.1	Solyc09g065880.2.1	AT3G54650.1	18948957
AT2G32710.1	Solyc07g054950.1.1	AT4G03270.1	20407024
AT2G32710.1	Solyc07g054690.1.1	AT4G28230.1	20706207
AT2G32710.1	Solyc01g107730.2.1	AT4G34160.1	20407024
AT2G32710.1	Solyc03g118190.2.1	AT5G07310.1	20706207
AT2G32710.1	Solyc05g051410.2.1	AT5G10440.1	20407024
AT2G32710.1	Solyc11g010460.1.1	AT5G10440.1	20407024
AT2G32710.1	Solyc04g078310.2.1	AT5G43080.1	20407024
AT2G32710.1	Solyc12g088470.1.1	AT5G43080.1	20407024
AT2G32710.1	Solyc12g088500.1.1	AT5G43080.1	20407024
AT2G32710.1	Solyc12g088520.1.1	AT5G43080.1	20407024
AT2G32710.1	Solyc12g088530.1.1	AT5G43080.1	20407024
AT2G32710.1	Solyc06g082630.2.1	AT5G58290.1	20706207
AT2G32710.1	Solyc06g082660.2.1	AT5G58290.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019919	Potato	nucleus	95.26	94.44
Solyc09g091780.2.1	Tomato	nucleus	49.57	54.76
GSMUA_Achr8P12510_001	Banana	cytosol, mitochondrion, nucleus, plastid	41.38	50.0
GSMUA_Achr11P...	Banana	nucleus	43.1	50.0
GSMUA_Achr5P20430_001	Banana	nucleus	40.09	48.95
GSMUA_Achr1P00900_001	Banana	nucleus	38.79	47.62
Os10t0471700-02	Rice	nucleus	38.79	46.39
TraesCS1A01G151400.1	Wheat	nucleus	40.52	46.31
HORVU3Hr1G064490.1	Barley	nucleus	14.22	45.83
TraesCS1B01G168900.1	Wheat	cytosol, nucleus, plastid	40.09	45.81
TraesCS1D01G148400.2	Wheat	cytosol, nucleus, plastid	40.09	45.81
EER91497	Sorghum	cytosol	37.5	45.55
Zm00001d014046_P001	Maize	nucleus	37.07	44.79
Solyc09g061280.2.1	Tomato	nucleus	35.78	44.15
KRG92238	Soybean	nucleus	42.24	43.75
GSMUA_Achr11P...	Banana	nucleus	35.34	43.62
Zm00001d048363_P001	Maize	nucleus	39.66	42.79
EER95545	Sorghum	nucleus	39.22	42.72
Bra022897.1-P	Field mustard	nucleus	45.69	42.4
GSMUA_Achr5P12920_001	Banana	nucleus	40.09	42.08
CDY59640	Canola	nucleus	22.84	42.06
CDX84726	Canola	nucleus	44.4	41.7
Os03t0137800-01	Rice	mitochondrion, nucleus, plastid	39.66	41.63
CDX79470	Canola	nucleus	43.97	41.13
CDY23793	Canola	nucleus	43.1	40.98
Zm00001d027585_P001	Maize	nucleus	37.5	40.85
CDY12181	Canola	nucleus	41.81	40.59
GSMUA_Achr2P11790_001	Banana	nucleus	35.34	40.39
Bra005565.1-P	Field mustard	nucleus	38.36	39.38
Bra021808.1-P	Field mustard	nucleus	40.52	39.17
TraesCS5A01G506500.1	Wheat	nucleus	34.91	38.76
VIT_05s0029g00040.t01	Wine grape	nucleus	43.1	38.61
CDY19160	Canola	nucleus	40.09	38.27
GSMUA_Achr1P20410_001	Banana	nucleus	37.07	37.55
HORVU5Hr1G031690.1	Barley	extracellular	17.67	37.27
GSMUA_Achr4P26490_001	Banana	nucleus	34.91	37.16
GSMUA_Achr6P36640_001	Banana	nucleus	39.22	36.99
AT2G32710.1	Thale cress	nucleus	43.1	34.6
TraesCS4D01G332500.1	Wheat	nucleus	31.9	33.79
HORVU3Hr1G064580.1	Barley	nucleus	18.53	32.82
HORVU1Hr1G040110.3	Barley	nucleus, plastid	26.72	31.31
Zm00001d032732_P002	Maize	mitochondrion	25.0	29.9
GSMUA_Achr5P21770_001	Banana	nucleus	37.07	29.45
HORVU4Hr1G080410.1	Barley	nucleus	36.21	22.52

Protein Annotations

MapMan:13.1.1.3.1	Gene3D:4.10.365.10	InterPro:CDI	GO:GO:0003674	GO:GO:0004861	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007049	GO:GO:0007050
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234	GO:GO:0071901
UniProt:K4DHK5	PFAM:PF02234	PIRSF:PIRSF017811	PANTHER:PTHR10265	PANTHER:PTHR10265:SF30	EnsemblPlantsGene:Solyc12g098310.1
EnsemblPlants:Solyc12g098310.1.1	UniParc:UPI0001E3AEE1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:65869039..65871289

Molecular Weight (calculated)

26153.8 Da

IEP (calculated)

10.314

GRAVY (calculated)

-1.162

Length

232 amino acids

Sequence
(BLAST)

001: MGKYMRKRKT KATGEVVAVL DVSPLGVRTR AKTLALKRLQ KSSSGGGDGG DVGGGCYLQL RSRRLEKPLV GFEGKRRKHP LKESKRQNRS LRVREMKGQS
101: WNSGSGEGEE EKKEQVQENQ KEIDNNGSFE VENLLEFDGR ERTTRESTPC NLIRDPDSIP TPGSSTRANN ASEGNGREPT SAQRIIPTAH EMNDFFAGTE
201: EKQQKQFIEK YNFDPVNDKP LPGRYKWVKV DR

Best Arabidopsis Sequence Match ( AT5G48820.1 )
(BLAST)

001: MGKYMKKSKI TGDISVMEVS KATAPSPGVR TRAAKTLALK RLNSSAADSA LPNDSSCYLQ LRSRRLEKPS SLIEPKQPPR VHRSGIKESG SRSRVDSVNS
101: VPVAQSSNED ECFDNFVSVQ VSCGENSLGF ESRHSTREST PCNFVEDMEI MVTPGSSTRS MCRATKEYTR EQDNVIPTTS EMEEFFAYAE QQQQRLFMEK
201: YNFDIVNDIP LSGRYEWVQV KP

Arabidopsis Description

KRP3Inhibitor/interactor with cyclin-dependent kinase [Source:UniProtKB/TrEMBL;Acc:F4K388]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.