Factsheet for HORVU3Hr1G064490.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G003280.5	nucleus
HORVU2Hr1G014000.1
HORVU2Hr1G068360.8
HORVU2Hr1G077130.1
HORVU2Hr1G107280.1
HORVU3Hr1G067470.2
HORVU3Hr1G114440.21	nucleus
HORVU4Hr1G013320.1	nucleus
HORVU4Hr1G013700.2	nucleus
HORVU4Hr1G069310.3	nucleus
HORVU4Hr1G085830.4
HORVU5Hr1G014320.7
HORVU5Hr1G018180.1	nucleus
HORVU5Hr1G018820.2	nucleus
HORVU5Hr1G050270.8	nucleus
HORVU5Hr1G059770.2	endoplasmic reticulum
HORVU5Hr1G093570.1
HORVU5Hr1G093590.1
HORVU6Hr1G013680.2
HORVU6Hr1G077500.1	nucleus
HORVU7Hr1G117300.3	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32710.1	HORVU2Hr1G068360.8	AT1G10840.1	20706207
AT2G32710.1	HORVU5Hr1G059770.2	AT1G70210.1	20407024
AT2G32710.1	HORVU2Hr1G077130.1	AT1G71380.1	20706207
AT2G32710.1	HORVU3Hr1G114440.21	AT1G80370.1	20407024
AT2G32710.1	HORVU4Hr1G085830.4	AT3G48750.1	11449057
AT2G32710.1	HORVU6Hr1G013680.2	AT3G48750.1	11449057
AT2G32710.1	HORVU4Hr1G085830.4	AT3G48750.1	20706207
AT2G32710.1	HORVU6Hr1G013680.2	AT3G48750.1	20706207
AT2G32710.1	HORVU5Hr1G014320.7	AT3G54650.1	18948957
AT2G32710.1	HORVU5Hr1G093570.1	AT3G54650.1	18948957
AT2G32710.1	HORVU5Hr1G093590.1	AT3G54650.1	18948957
AT2G32710.1	HORVU0Hr1G003280.5	AT4G03270.1	20407024
AT2G32710.1	HORVU7Hr1G117300.3	AT4G03270.1	20407024
AT2G32710.1	HORVU5Hr1G050270.8	AT4G34160.1	20407024
AT2G32710.1	HORVU4Hr1G013700.2	AT4G37630.1	20407024
AT2G32710.1	HORVU5Hr1G018180.1	AT4G37630.1	20407024
AT2G32710.1	HORVU6Hr1G077500.1	AT5G10440.1	20407024
AT2G32710.1	HORVU4Hr1G013320.1	AT5G43080.1	20407024
AT2G32710.1	HORVU4Hr1G069310.3	AT5G43080.1	20407024
AT2G32710.1	HORVU5Hr1G018820.2	AT5G43080.1	20407024
AT2G32710.1	HORVU2Hr1G014000.1	AT5G58290.1	20706207
AT2G32710.1	HORVU2Hr1G107280.1	AT5G58290.1	20706207
AT2G32710.1	HORVU3Hr1G067470.2	AT5G58290.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G031690.1	Barley	extracellular	87.5	57.27
HORVU3Hr1G064580.1	Barley	nucleus	93.06	51.15
TraesCS5A01G506500.1	Wheat	nucleus	84.72	29.19
TraesCS4D01G332500.1	Wheat	nucleus	84.72	27.85
CDY59640	Canola	nucleus	41.67	23.81
Os03t0137800-01	Rice	mitochondrion, nucleus, plastid	72.22	23.53
Zm00001d048363_P001	Maize	nucleus	63.89	21.4
HORVU1Hr1G040110.3	Barley	nucleus, plastid	56.94	20.71
Zm00001d027585_P001	Maize	nucleus	61.11	20.66
EER95545	Sorghum	nucleus	61.11	20.66
GSMUA_Achr11P...	Banana	nucleus	51.39	18.5
HORVU4Hr1G080410.1	Barley	nucleus	95.83	18.5
GSMUA_Achr5P20430_001	Banana	nucleus	48.61	18.42
GSMUA_Achr1P00900_001	Banana	nucleus	43.06	16.4
GSMUA_Achr8P12510_001	Banana	cytosol, mitochondrion, nucleus, plastid	43.06	16.15
GSMUA_Achr2P11790_001	Banana	nucleus	44.44	15.76
KRG92238	Soybean	nucleus	48.61	15.62
GSMUA_Achr4P26490_001	Banana	nucleus	47.22	15.6
GSMUA_Achr11P...	Banana	nucleus	40.28	15.43
GSMUA_Achr5P12920_001	Banana	nucleus	47.22	15.38
PGSC0003DMT400076291	Potato	nucleus	44.44	15.31
Solyc09g091780.2.1	Tomato	nucleus	44.44	15.24
Solyc12g098310.1.1	Tomato	nucleus	45.83	14.22
CDX84726	Canola	nucleus	48.61	14.17
CDX79470	Canola	nucleus	48.61	14.11
Bra022897.1-P	Field mustard	nucleus	48.61	14.0
CDY23793	Canola	nucleus	47.22	13.93
PGSC0003DMT400019919	Potato	nucleus	44.44	13.68
Bra021808.1-P	Field mustard	nucleus	43.06	12.92
Bra005565.1-P	Field mustard	nucleus	40.28	12.83
CDY19160	Canola	nucleus	43.06	12.76
VIT_05s0029g00040.t01	Wine grape	nucleus	45.83	12.74
AT2G32710.1	Thale cress	nucleus	50.0	12.46
CDY12181	Canola	nucleus	40.28	12.13

Protein Annotations

MapMan:13.1.1.3.1	Gene3D:4.10.365.10	UniProt:A0A287LCZ3	InterPro:CDI	GO:GO:0003674	GO:GO:0004861
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007049
GO:GO:0007050	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234
GO:GO:0071901	EnsemblPlantsGene:HORVU3Hr1G064490	EnsemblPlants:HORVU3Hr1G064490.1	PFAM:PF02234	PIRSF:PIRSF017811	PANTHER:PTHR10265
PANTHER:PTHR10265:SF23	UniParc:UPI000B4627F9	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:492168518..492169214

Molecular Weight (calculated)

8260.6 Da

IEP (calculated)

7.929

GRAVY (calculated)

-0.833

Length

72 amino acids

Sequence
(BLAST)

1: MSTPGSATRA SNCSRRRPQT PVCRYVPSSL EMDEFFAAAE QQQHQTFRDK YNFCPASERP LPGRFEWTAL DC

Best Arabidopsis Sequence Match ( AT2G32710.2 )
(BLAST)

001: MGKYIRKSKI DGAGAGAGGG GGGGGGGESS IALMDVVSPS SSSSLGVLTR AKSLALQQQQ QRCLLQKPSS PSSLPPTSAS PNPPSKQKMK KKQQQMNDCG
101: SYLQLRSRRL QKKPPIVVIR STKRRKQQRR NETCGRNPNP RSNLDSIRGD GSRSDSVSES VVFGKDKDLI SEINKDPTFG QNFFDLEEEH TQRTTRESTP
201: CSLIRRPEIM TTPGSSTKLN ICVSESNQRE DSLSRSHRRR PTTPEMDEFF SGAEEEQQKQ FIEKYNFDPV NEQPLPGRFE WTKVDD

Arabidopsis Description

KRP4Cyclin-dependent kinase inhibitor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.