Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G161000.1 | Wheat | cytosol | 94.3 | 93.5 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 94.3 | 93.5 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 93.73 | 92.94 |
| Os09t0111100-01 | Rice | cytosol | 69.8 | 67.31 |
| Zm00001d019696_P001 | Maize | cytosol | 74.07 | 67.18 |
| EER96424 | Sorghum | cytosol | 72.08 | 66.23 |
| Zm00001d005293_P001 | Maize | cytosol | 71.51 | 64.19 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 44.16 | 39.95 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 40.74 | 39.5 |
| VIT_07s0129g01100.t01 | Wine grape | nucleus | 33.33 | 37.86 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 36.75 | 37.39 |
| GSMUA_AchrUn_... | Banana | cytosol | 33.33 | 36.91 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 41.88 | 36.12 |
| PGSC0003DMT400039904 | Potato | nucleus | 31.62 | 34.47 |
| Solyc12g088650.1.1 | Tomato | nucleus | 31.34 | 33.85 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 38.46 | 33.17 |
| PGSC0003DMT400020648 | Potato | nucleus | 30.77 | 32.53 |
| VIT_03s0180g00040.t01 | Wine grape | nucleus | 35.33 | 32.12 |
| KRH05626 | Soybean | cytosol | 19.66 | 32.09 |
| PGSC0003DMT400066557 | Potato | nucleus | 31.62 | 31.01 |
| Bra012909.1-P | Field mustard | nucleus | 28.77 | 30.79 |
| CDY02095 | Canola | nucleus | 28.77 | 30.79 |
| KRH28424 | Soybean | nucleus | 29.34 | 30.75 |
| Bra029992.1-P | Field mustard | nucleus | 30.77 | 30.68 |
| CDX83112 | Canola | nucleus | 30.77 | 30.68 |
| VIT_18s0001g09920.t01 | Wine grape | nucleus | 32.48 | 30.65 |
| Solyc01g107730.2.1 | Tomato | nucleus | 31.62 | 30.49 |
| PGSC0003DMT400068629 | Potato | cytosol | 20.8 | 30.42 |
| CDY57741 | Canola | nucleus | 31.62 | 30.41 |
| CDX68573 | Canola | nucleus | 30.48 | 30.4 |
| CDY23022 | Canola | nucleus | 28.49 | 30.4 |
| Solyc04g078470.2.1 | Tomato | nucleus | 29.06 | 30.36 |
| CDY30607 | Canola | nucleus | 30.48 | 30.31 |
| Bra036051.1-P | Field mustard | nucleus | 30.48 | 30.31 |
| CDX72453 | Canola | nucleus | 31.05 | 30.28 |
| CDX76265 | Canola | nucleus | 31.34 | 30.14 |
| CDY49278 | Canola | nucleus | 31.62 | 30.08 |
| KRH15412 | Soybean | cytosol | 23.08 | 30.0 |
| KRH04529 | Soybean | nucleus | 31.62 | 29.92 |
| Bra017629.1-P | Field mustard | nucleus | 31.34 | 29.89 |
| CDY17742 | Canola | nucleus | 30.2 | 29.86 |
| Solyc02g092980.2.1 | Tomato | nucleus | 30.48 | 29.8 |
| Solyc02g064860.1.1 | Tomato | nucleus | 19.94 | 29.79 |
| Solyc02g064910.1.1 | Tomato | nucleus | 19.94 | 29.79 |
| Solyc02g064900.1.1 | Tomato | nucleus | 29.34 | 29.77 |
| KRH77050 | Soybean | nucleus, plastid | 28.21 | 29.64 |
| Bra034612.1-P | Field mustard | nucleus | 31.05 | 29.62 |
| KRH61348 | Soybean | nucleus | 29.34 | 29.51 |
| PGSC0003DMT400064307 | Potato | nucleus | 30.48 | 29.48 |
| AT3G50070.1 | Thale cress | nucleus | 30.2 | 29.36 |
| AT4G34160.1 | Thale cress | nucleus | 31.34 | 29.26 |
| KRH57973 | Soybean | nucleus | 31.91 | 29.24 |
| CDX75405 | Canola | nucleus | 31.05 | 29.22 |
| Bra011501.1-P | Field mustard | nucleus | 31.05 | 29.22 |
| CDY69708 | Canola | nucleus | 31.05 | 29.14 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 14.24 | 29.07 |
| PGSC0003DMT400031329 | Potato | nucleus | 26.5 | 28.88 |
| Bra012146.1-P | Field mustard | nucleus | 29.06 | 28.81 |
| CDY01425 | Canola | nucleus | 29.06 | 28.81 |
| CDY12825 | Canola | nucleus | 29.34 | 28.77 |
| KRG90996 | Soybean | nucleus | 32.19 | 28.75 |
| KRH52038 | Soybean | nucleus | 29.63 | 28.73 |
| HORVU5Hr1G018180.1 | Barley | nucleus | 28.49 | 28.65 |
| KRH35760 | Soybean | nucleus | 31.91 | 27.86 |
| HORVU0Hr1G013250.1 | Barley | cytosol | 16.24 | 26.64 |
| PGSC0003DMT400011487 | Potato | nucleus | 13.96 | 26.63 |
| PGSC0003DMT400068627 | Potato | nucleus | 23.08 | 26.3 |
| AT5G67260.2 | Thale cress | nucleus | 30.2 | 26.24 |
| HORVU5Hr1G059770.2 | Barley | nucleus | 25.64 | 25.21 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 24.79 | 24.79 |
| VIT_00s0194g00280.t01 | Wine grape | mitochondrion | 19.94 | 24.56 |
| HORVU7Hr1G033350.3 | Barley | cytosol | 20.51 | 23.92 |
| HORVU0Hr1G003280.5 | Barley | cytosol, mitochondrion, nucleus | 16.52 | 23.11 |
| HORVU4Hr1G013700.2 | Barley | plastid | 24.22 | 21.52 |
| HORVU7Hr1G117300.3 | Barley | cytosol | 9.12 | 19.39 |
| HORVU2Hr1G030130.1 | Barley | plastid | 21.94 | 16.81 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G050270.8 | EnsemblPlantsGene:HORVU5Hr1G050270 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF342 | PFAM:PF00134 | SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 |
| UniParc:UPI0002948C40 | UniProt:M0ZAE9 | MapMan:13.1.1.1.4 | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:389709444..389711594
Molecular Weight (calculated)
37148.9 Da
IEP (calculated)
4.674
GRAVY (calculated)
0.004
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFAALFVDS LYCPEEHHDL FQEPAEDQWP EHQPPVALDD ELPALFAVFR GKEEVLLREA GDGYGGDARR EAAVGWATRA AARLGFSALT AALAAAYLDR
101: CFLSGGALRL GDQPWMARLA AVACVALAAK VEETRVPVLL DLQLCAAESA GDADVFDAKT VRRMELLVLS ALAWRMHPVT PFSFLHPVLV DARLRQCESA
201: LLAVMPDCSW PRYRPSAWAA AALLTTAGYG SDDAELLALI NAPEDEVTEC VKILTGGAAA GFTGIGGDNK RKRAAAGLHS PPQSPSGVIG AAAYFSCESS
301: SSSADSRSGA ATAWPGSVSV SSSPEPPGRP LKRATATAML PPDEESRDAW R
101: CFLSGGALRL GDQPWMARLA AVACVALAAK VEETRVPVLL DLQLCAAESA GDADVFDAKT VRRMELLVLS ALAWRMHPVT PFSFLHPVLV DARLRQCESA
201: LLAVMPDCSW PRYRPSAWAA AALLTTAGYG SDDAELLALI NAPEDEVTEC VKILTGGAAA GFTGIGGDNK RKRAAAGLHS PPQSPSGVIG AAAYFSCESS
301: SSSADSRSGA ATAWPGSVSV SSSPEPPGRP LKRATATAML PPDEESRDAW R
001: MALEEEEESQ NAPFCVLDGL FCEEESEFHE QVDLCDESVE KFPFLNLGLS DHDMLWDDDE LSTLISKQEP CLYDEILDDE FLVLCREKAL DWIFKVKSHY
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
Arabidopsis Description
CYCD3-3CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.