Factsheet for VIT_07s0129g01100.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g00670.t01
VIT_06s0061g00810.t01
VIT_07s0031g00800.t01
VIT_15s0045g00310.t01
VIT_18s0122g00550.t01
VIT_19s0090g00280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34160.1	VIT_18s0122g00550.t01	AT1G76540.1	12857813
AT4G34160.1	VIT_06s0061g00810.t01	AT2G27970.1	17426018
AT4G34160.1	VIT_06s0061g00810.t01	AT2G27970.1	20706207
AT4G34160.1	VIT_03s0063g00670.t01	AT3G19150.1	17426018
AT4G34160.1	VIT_07s0031g00800.t01	AT3G19150.1	17426018
AT4G34160.1	VIT_03s0063g00670.t01	AT3G19150.1	20706207
AT4G34160.1	VIT_07s0031g00800.t01	AT3G19150.1	20706207
AT4G34160.1	VIT_15s0045g00310.t01	AT3G48750.1	11096103
AT4G34160.1	VIT_15s0045g00310.t01	AT3G48750.1	16517759
AT4G34160.1	VIT_15s0045g00310.t01	AT3G48750.1	16766674
AT4G34160.1	VIT_15s0045g00310.t01	AT3G48750.1	17426018
AT4G34160.1	VIT_15s0045g00310.t01	AT3G48750.1	20706207
AT4G34160.1	VIT_19s0090g00280.t01	AT5G54900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0180g00040.t01	Wine grape	nucleus	73.79	59.07
PGSC0003DMT400066557	Potato	nucleus	62.14	53.63
Solyc01g107730.2.1	Tomato	nucleus	63.11	53.57
VIT_18s0001g09920.t01	Wine grape	nucleus	63.43	52.69
KRG90996	Soybean	nucleus	64.4	50.64
KRH35760	Soybean	nucleus	62.78	48.26
Bra011501.1-P	Field mustard	nucleus	57.61	47.72
CDX72453	Canola	nucleus	55.02	47.22
CDX75405	Canola	nucleus	56.96	47.19
CDY57741	Canola	nucleus	55.34	46.85
CDX76265	Canola	nucleus	55.34	46.85
CDY69708	Canola	nucleus	56.63	46.79
Bra034612.1-P	Field mustard	nucleus	55.34	46.47
AT4G34160.1	Thale cress	nucleus	56.31	46.28
Bra017629.1-P	Field mustard	nucleus	55.02	46.2
CDY49278	Canola	nucleus	55.02	46.07
VIT_00s0194g00280.t01	Wine grape	mitochondrion	36.57	39.65
GSMUA_Achr1P09780_001	Banana	cytosol	42.07	33.51
HORVU5Hr1G050270.8	Barley	cytosol	37.86	33.33
TraesCS5B01G158400.1	Wheat	cytosol	38.19	33.33
TraesCS5D01G165900.1	Wheat	cytosol	38.19	33.33
TraesCS5A01G161000.1	Wheat	cytosol	38.19	33.33
GSMUA_Achr4P20220_001	Banana	nucleus	38.84	33.15
GSMUA_Achr3P13140_001	Banana	nucleus	43.04	32.68
GSMUA_Achr2P05260_001	Banana	nucleus	36.25	32.46
GSMUA_AchrUn_...	Banana	cytosol	32.69	31.86
VIT_01s0026g00710.t01	Wine grape	nucleus	33.01	31.48
Os09t0111100-01	Rice	cytosol	36.57	31.04
VIT_18s0001g07220.t01	Wine grape	nucleus	35.28	30.7
Zm00001d019696_P001	Maize	cytosol	37.22	29.72
Zm00001d005293_P001	Maize	cytosol	37.22	29.41
EER96424	Sorghum	cytosol	35.92	29.06
GSMUA_Achr3P01010_001	Banana	nucleus	38.19	28.99
VIT_00s0199g00210.t01	Wine grape	nucleus	32.69	28.61
VIT_00s0322g00010.t01	Wine grape	nucleus	26.86	27.21
VIT_18s0001g09160.t01	Wine grape	nucleus	27.18	26.5
VIT_03s0091g01060.t01	Wine grape	nucleus	29.77	25.99
VIT_12s0134g00500.t01	Wine grape	nucleus	24.27	25.51
VIT_07s0129g00200.t01	Wine grape	nucleus	26.86	25.15
VIT_08s0007g00790.t01	Wine grape	nucleus	24.92	22.78
VIT_00s0203g00160.t01	Wine grape	cytosol	21.36	20.89

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100267897	wikigene:100267897	MapMan:13.1.1.1.4	EMBL:AM454724	ProteinID:CAN59802
ProteinID:CAN59802.1	ProteinID:CBI33773	ProteinID:CBI33773.3	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	UniProt:D7TTF1	EMBL:FN596246	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EntrezGene:LOC100267897	wikigene:LOC100267897	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF216	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
TIGR:TC64315	UniParc:UPI0001BE43C5	ArrayExpress:VIT_07s0129g01100	EnsemblPlantsGene:VIT_07s0129g01100	EnsemblPlants:VIT_07s0129g01100.t01	RefSeq:XP_002283380
RefSeq:XP_002283380.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:16254598..16256509

Molecular Weight (calculated)

35100.2 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.085

Length

309 amino acids

Sequence
(BLAST)

001: MALQEQETLS QNAPFFLDGL YCEEEHGFLT VARTKAVEWM LKVNAHYGFS ALTAVLAVNY FDRFLSSSCF QRDKPWMSQL AAVTCLSLAA KVDETDVPLL
101: LDLQVEETKY VFEAKTIQRM ELLVLSSLQW KMNPVTPISF FDHIIRRLGL KTHLHWEFLE RCERLLLSVI ADSRFLCYLP STLATATMLH IITEVEPCNP
201: LEYQNQLLSV LKISKNDVDD CYKLILEFLG SHGHTQNQTH KRKHLSLPSS PSGIFDAPFS CDSSSDSWAM ATSISSSSQP LFKKSRAQDQ QMRLPSLNRV
301: SVDVLSSPR

Best Arabidopsis Sequence Match ( AT5G67260.1 )
(BLAST)

001: MALEKEEEAS QNGAFCVLDG LYCEEETGFV EDDLDDDGDL DFLEKSDESV VKFQFLPLLD MFLWDDDEIL SLISKENETN PCFGEQILDG FLVSCRKEAL
101: DWVLRVKSHY GFTSLTAILA VNYFDRFMTS IKLQTDKPWM SQLVAVASLS LAAKVEEIQV PLLLDLQVEE ARYLFEAKTI QRMELLILST LQWRMHPVTP
201: ISFFDHIIRR FGSKWHQQLD FCRKCERLLI SVIADTRFMR YFPSVLATAI MILVFEELKP CDEVEYQSQI TTLLKVNQEK VNECYELLLE HNPSKKRMMN
301: LVDQDSPSGV LDFDDSSNSS WNVSTTASVS SSSSSPEPLL KRRRVQEQQM RLPSINRMFL DVLSSPR

Arabidopsis Description

CYCD3;2CYCLIN D3;2 [Source:TAIR;Acc:AT5G67260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.