Factsheet for VIT_08s0007g00790.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0061g00810.t01
VIT_14s0066g00600.t01
VIT_14s0068g02140.t01
VIT_15s0045g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02110.1	VIT_06s0061g00810.t01	AT2G27960.1	20706207
AT5G02110.1	VIT_06s0061g00810.t01	AT2G27970.1	20706207
AT5G02110.1	VIT_15s0045g00310.t01	AT3G48750.1	20706207
AT5G02110.1	VIT_14s0068g02140.t01	AT5G14170.1	20706207
AT5G02110.1	VIT_14s0066g00600.t01	AT5G40460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75669	Soybean	cytosol	38.46	44.98
KRH65892	Soybean	cytosol	37.57	44.1
KRH54622	Soybean	cytosol	18.34	40.52
KRH54628	Soybean	cytosol	18.34	40.52
GSMUA_Achr10P...	Banana	cytosol	28.11	37.55
GSMUA_Achr6P34040_001	Banana	nucleus	28.99	35.64
Bra005708.1-P	Field mustard	cytosol	33.73	33.24
CDY55121	Canola	cytosol	33.73	33.24
CDY10467	Canola	cytosol	32.25	32.15
Bra009612.1-P	Field mustard	cytosol	32.25	32.06
CDY40332	Canola	cytosol	31.95	31.76
AT5G02110.1	Thale cress	cytosol	31.95	31.67
TraesCS4A01G177400.1	Wheat	cytosol	30.47	30.93
TraesCS4B01G140400.1	Wheat	cytosol, nucleus, plastid	29.29	29.82
TraesCS4D01G135100.1	Wheat	cytosol, nucleus, plastid	29.29	29.38
Os11t0706801-00	Rice	nucleus	26.04	27.5
VIT_01s0026g00710.t01	Wine grape	nucleus	26.33	27.47
VIT_12s0134g00500.t01	Wine grape	nucleus	21.89	25.17
VIT_18s0001g07220.t01	Wine grape	nucleus	26.33	25.07
VIT_07s0129g01100.t01	Wine grape	nucleus	22.78	24.92
VIT_03s0091g01060.t01	Wine grape	nucleus	25.74	24.58
CDX80803	Canola	cytosol	32.54	24.39
VIT_00s0322g00010.t01	Wine grape	nucleus	21.89	24.26
VIT_00s0199g00210.t01	Wine grape	nucleus	25.15	24.08
OQU84124	Sorghum	nucleus	29.88	23.65
Zm00001d048594_P001	Maize	cytosol	28.99	23.06
VIT_00s0194g00280.t01	Wine grape	mitochondrion	19.23	22.81
VIT_00s0203g00160.t01	Wine grape	cytosol	21.01	22.47
VIT_18s0001g09160.t01	Wine grape	nucleus	20.71	22.08
VIT_03s0180g00040.t01	Wine grape	nucleus	23.96	20.98
VIT_18s0001g09920.t01	Wine grape	nucleus	22.19	20.16
VIT_07s0129g00200.t01	Wine grape	nucleus	19.53	20.0

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100263149	wikigene:100263149	MapMan:13.1.1.1.4	ProteinID:CBI30518	ProteinID:CBI30518.3
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	UniProt:D7THK2	EMBL:FN595991
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EntrezGene:LOC100263149	wikigene:LOC100263149
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF215	SMART:SM00385
SUPFAM:SSF47954	UniParc:UPI0001BE35DA	ArrayExpress:VIT_08s0007g00790	EnsemblPlantsGene:VIT_08s0007g00790	EnsemblPlants:VIT_08s0007g00790.t01	unigene:Vvi.15092
RefSeq:XP_002271184	RefSeq:XP_002271184.2	:	:	:	:

Description

No Description!

Coordinates

chr8:-:14981483..14983124

Molecular Weight (calculated)

39112.1 Da

IEP (calculated)

6.394

GRAVY (calculated)

-0.237

Length

338 amino acids

Sequence
(BLAST)

001: MESLLCDEIW LTSPVTPDPP CRAPMQPNFD IYASSFYTTK QDREQALAIC MRQELSYMPE PEYAHRLRFD DMGISRFRVI QWIIKSRSRL NLSLETVFSA
101: ANYLDRFISM NQWHGWKYWM VELLSVACLS VASKFTESFT PSFDEIQMED LEHSFESSTI QRMELTLLQA LGWRLRSTTP YTFAELLLWS IDSLQPYLHQ
201: ELITRVTDLL LHSLSDSKFL DFRPSVVAVS AIRCCSEELL SSKSDASVMT YLTDFIPPEQ KDDLARCQKI MELRMTDPLY KIKVCGNSKY CPSSPITVLT
301: MKGTNTCDCH VNLSVSKMQS GSNINFRSNL RKRMREGH

Best Arabidopsis Sequence Match ( AT5G02110.1 )
(BLAST)

001: MDNLLCEESW PASPLTPEPL PNFRHRSHDN DVVKMYPEID AATMEEAIAM DLEKELCFNN HGDKFVEFFV SKKLTDYRFH AFQWLIQTRS RLNLSYETVF
101: SAANCFDRFV YMTCCDEWTN WMVELVAVTS LSIASKFNEV TTPLLEELEM EGLTHMFHVN TVAQMELIIL KALEWRVNAV TSYTFSQTLV SKIGMVGDHM
201: IMNRITNHLL DVICDLKMLQ YPPSVVATAA IWILMEDKVC RESIMNLFEQ NHKEKIVKCV DGMKNRDIDH QSSRRRYSEG RSILSLLQRG DVMNMNGDYN
301: VEDLSKIFQI FRYEKKKRDR GNHQDNIRPA KRMTIEMSNY I

Arabidopsis Description

CYCD7-1Putative cyclin-D7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.