Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU84124 | Sorghum | nucleus | 66.35 | 66.04 |
| TraesCS4B01G140400.1 | Wheat | cytosol, nucleus, plastid | 41.88 | 53.61 |
| TraesCS4A01G177400.1 | Wheat | cytosol | 41.88 | 53.45 |
| TraesCS4D01G135100.1 | Wheat | cytosol, nucleus, plastid | 41.88 | 52.82 |
| Os11t0706801-00 | Rice | nucleus | 38.82 | 51.56 |
| GSMUA_Achr6P34040_001 | Banana | nucleus | 28.0 | 43.27 |
| GSMUA_Achr10P... | Banana | cytosol | 25.18 | 42.29 |
| KRH75669 | Soybean | cytosol | 21.18 | 31.14 |
| KRH65892 | Soybean | cytosol | 20.94 | 30.9 |
| KRH54622 | Soybean | cytosol | 11.06 | 30.72 |
| KRH54628 | Soybean | cytosol | 11.06 | 30.72 |
| VIT_08s0007g00790.t01 | Wine grape | nucleus | 23.06 | 28.99 |
| CDY40332 | Canola | cytosol | 20.24 | 25.29 |
| Bra009612.1-P | Field mustard | cytosol | 20.24 | 25.29 |
| CDY10467 | Canola | cytosol | 20.0 | 25.07 |
| CDY55121 | Canola | cytosol | 20.24 | 25.07 |
| Zm00001d018128_P001 | Maize | nucleus | 20.94 | 25.07 |
| Bra005708.1-P | Field mustard | cytosol | 20.0 | 24.78 |
| Zm00001d052185_P001 | Maize | nucleus | 20.47 | 24.17 |
| AT5G02110.1 | Thale cress | cytosol | 19.06 | 23.75 |
| Zm00001d022175_P001 | Maize | nucleus | 19.76 | 22.28 |
| Zm00001d029407_P001 | Maize | nucleus | 17.88 | 21.97 |
| Zm00001d005928_P002 | Maize | nucleus | 18.59 | 21.88 |
| Zm00001d021745_P001 | Maize | cytosol, nucleus, plastid | 15.06 | 20.85 |
| Zm00001d050475_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 15.06 | 20.71 |
| Zm00001d048143_P003 | Maize | nucleus, peroxisome, plastid | 16.0 | 19.26 |
| Zm00001d005293_P001 | Maize | cytosol | 17.41 | 18.93 |
| Zm00001d031837_P001 | Maize | nucleus | 18.82 | 18.87 |
| Zm00001d019696_P001 | Maize | cytosol | 17.18 | 18.86 |
| Zm00001d030894_P002 | Maize | nucleus | 15.29 | 18.84 |
| CDX80803 | Canola | cytosol | 19.76 | 18.63 |
| Zm00001d020353_P001 | Maize | nucleus | 14.35 | 18.43 |
| Zm00001d033330_P001 | Maize | nucleus | 15.06 | 18.08 |
| Zm00001d041345_P001 | Maize | cytosol | 14.82 | 18.05 |
| Zm00001d028092_P001 | Maize | cytosol | 11.06 | 17.28 |
| Zm00001d013728_P001 | Maize | cytosol | 14.82 | 17.26 |
| Zm00001d044984_P001 | Maize | mitochondrion | 10.59 | 16.3 |
| Zm00001d049334_P001 | Maize | mitochondrion | 10.35 | 15.07 |
| Zm00001d038580_P001 | Maize | plastid | 10.35 | 13.21 |
| Zm00001d003439_P001 | Maize | plastid | 2.82 | 9.45 |
Protein Annotations
| EnsemblPlants:Zm00001d048594_P001 | EnsemblPlants:Zm00001d048594_T001 | EnsemblPlantsGene:Zm00001d048594 | EntrezGene:103652661 | Gene3D:1.10.472.10 | InterPro:Cyclin-like |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_N | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF215 | PFAM:PF00134 | ProteinID:AQK48232.1 |
| SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0004DEB606 | UniProt:A0A1D6PMZ3 | MapMan:13.1.1.1.4 |
Description
Putative cyclin-D7-1
Coordinates
chr4:+:980011..981702
Molecular Weight (calculated)
46838.3 Da
IEP (calculated)
5.816
GRAVY (calculated)
-0.241
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSSLLYCD EDPLVVSTTP PPQLASNSYT LLAPQQQAAS DDAEEEDHHL KELLVDHMAK QRSYAPTCRE GYLEHLLPRR TTTQPEETIT IPGPGSVSAA
101: RSGGVHYIIY AFGRLGLTVA TVFNAVNYLD RFLSINCHLR WEAWMVELVS VACLSIACKL DEVNIPSLHH LQMEEVMSHS FLPATVRDME LTLLKALQWR
201: LACVTPYSFL LPLLNTPPHT AAWTSRCTRL LIRSLAEPLF IQFDASVIAS SALRCVALQD HRHHHHNTTT TDYGSCIISR LVRPATDTFN ALCDGADDDD
301: DDECFMMMKT LCDDDASCSS SADQLRIGGT PIVTSSTCMS SDEQLRRSPS VSVIIRRRSC LGLKTAGGGG SRRINSSRSA VISRRRRRLF GSSASAQAQA
401: PAPQAEGKDS DDDTTNVRDE DISHT
101: RSGGVHYIIY AFGRLGLTVA TVFNAVNYLD RFLSINCHLR WEAWMVELVS VACLSIACKL DEVNIPSLHH LQMEEVMSHS FLPATVRDME LTLLKALQWR
201: LACVTPYSFL LPLLNTPPHT AAWTSRCTRL LIRSLAEPLF IQFDASVIAS SALRCVALQD HRHHHHNTTT TDYGSCIISR LVRPATDTFN ALCDGADDDD
301: DDECFMMMKT LCDDDASCSS SADQLRIGGT PIVTSSTCMS SDEQLRRSPS VSVIIRRRSC LGLKTAGGGG SRRINSSRSA VISRRRRRLF GSSASAQAQA
401: PAPQAEGKDS DDDTTNVRDE DISHT
001: MDNLLCEESW PASPLTPEPL PNFRHRSHDN DVVKMYPEID AATMEEAIAM DLEKELCFNN HGDKFVEFFV SKKLTDYRFH AFQWLIQTRS RLNLSYETVF
101: SAANCFDRFV YMTCCDEWTN WMVELVAVTS LSIASKFNEV TTPLLEELEM EGLTHMFHVN TVAQMELIIL KALEWRVNAV TSYTFSQTLV SKIGMVGDHM
201: IMNRITNHLL DVICDLKMLQ YPPSVVATAA IWILMEDKVC RESIMNLFEQ NHKEKIVKCV DGMKNRDIDH QSSRRRYSEG RSILSLLQRG DVMNMNGDYN
301: VEDLSKIFQI FRYEKKKRDR GNHQDNIRPA KRMTIEMSNY I
101: SAANCFDRFV YMTCCDEWTN WMVELVAVTS LSIASKFNEV TTPLLEELEM EGLTHMFHVN TVAQMELIIL KALEWRVNAV TSYTFSQTLV SKIGMVGDHM
201: IMNRITNHLL DVICDLKMLQ YPPSVVATAA IWILMEDKVC RESIMNLFEQ NHKEKIVKCV DGMKNRDIDH QSSRRRYSEG RSILSLLQRG DVMNMNGDYN
301: VEDLSKIFQI FRYEKKKRDR GNHQDNIRPA KRMTIEMSNY I
Arabidopsis Description
CYCD7-1Putative cyclin-D7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.