Factsheet for Zm00001d005928_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96886	Sorghum	nucleus	88.37	84.39
Os09t0466100-01	Rice	nucleus	68.42	69.38
TraesCS5A01G246800.1	Wheat	nucleus	63.99	65.44
TraesCS5A01G247000.1	Wheat	nucleus	63.71	64.79
TraesCS5B01G243900.1	Wheat	nucleus	63.71	64.79
TraesCS5B01G244100.1	Wheat	nucleus	64.27	64.44
TraesCS5D01G253200.1	Wheat	nucleus	63.16	64.04
TraesCS5D01G253500.1	Wheat	nucleus	63.16	62.98
Zm00001d050475_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	52.63	61.49
HORVU7Hr1G033350.3	Barley	cytosol	42.11	50.5
Zm00001d031837_P001	Maize	nucleus	59.0	50.24
Zm00001d052185_P001	Maize	nucleus	48.48	48.61
Zm00001d018128_P001	Maize	nucleus	47.65	48.45
HORVU0Hr1G013250.1	Barley	cytosol	28.25	47.66
Zm00001d022175_P001	Maize	nucleus	40.72	38.99
Zm00001d029407_P001	Maize	nucleus	36.57	38.15
Zm00001d044984_P001	Maize	mitochondrion	22.16	28.99
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	24.1	28.34
Zm00001d020353_P001	Maize	nucleus	25.76	28.1
Zm00001d049334_P001	Maize	mitochondrion	21.88	27.05
Zm00001d041345_P001	Maize	cytosol	25.76	26.65
Zm00001d048143_P003	Maize	nucleus, peroxisome, plastid	26.04	26.63
Zm00001d033330_P001	Maize	nucleus	25.48	25.99
Zm00001d019696_P001	Maize	cytosol	27.42	25.58
Zm00001d005293_P001	Maize	cytosol	27.42	25.32
Zm00001d030894_P002	Maize	nucleus	24.1	25.22
Zm00001d013728_P001	Maize	cytosol	25.48	25.21
Zm00001d038580_P001	Maize	plastid	22.16	24.02
Zm00001d028092_P001	Maize	cytosol	15.24	20.22
Zm00001d048594_P001	Maize	cytosol	21.88	18.59
Zm00001d003439_P001	Maize	plastid	5.26	14.96

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:103647502	MapMan:13.1.1.1.4	UniProt:A0A1D6ERL6	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
ProteinID:ONM22380.1	PFAM:PF00134	PFAM:PF02984	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF339
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00022185AE	EnsemblPlantsGene:Zm00001d005928	EnsemblPlants:Zm00001d005928_P002
EnsemblPlants:Zm00001d005928_T002	SEG:seg	:	:	:	:

Description

D-type cyclin

Coordinates

chr2:+:193091485..193094035

Molecular Weight (calculated)

39093.3 Da

IEP (calculated)

5.709

GRAVY (calculated)

-0.149

Length

361 amino acids

Sequence
(BLAST)

001: MAPSSYEMAA STLLCGEDSS SILDLEAGGQ EEEEEVLLAR SRTRGEPSVV FPVPSEECVA GFVEAEAAHM PREDYAERLR GGGTDLRVRT DAIDWIWKVH
101: AYYGFGPLTA CLAVNYLDRF LSLYQLPEGK SWTTQLLSVA CLSLAAKMEE TYVPPSLDLQ VGDARYVFEA KTVQRMELLV LSTLRWRMRA VTPFSYIDYF
201: LHRLKDGGAP SRRAVLRSAE LILRVARGTC CLGFRPSEVA AAVAAAVAGE EHAVDIDKAC THRVHEERVS RCLEAIQATV ALLAPAQPLK AEGPSSGRSR
301: ASSSSATVPR SPTGVLDAGC LSYRSDDAAA AAAASHASSA WRDEDGDCSP AVCSKRRKTS R

Best Arabidopsis Sequence Match ( AT5G65420.1 )
(BLAST)

001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS

Arabidopsis Description

CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.