Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G246800.1 | Wheat | nucleus | 62.79 | 53.54 |
| TraesCS5A01G247000.1 | Wheat | nucleus | 63.12 | 53.52 |
| TraesCS5D01G253200.1 | Wheat | nucleus | 63.12 | 53.37 |
| TraesCS5B01G243900.1 | Wheat | nucleus | 62.79 | 53.24 |
| TraesCS5B01G244100.1 | Wheat | nucleus | 62.13 | 51.94 |
| TraesCS5D01G253500.1 | Wheat | nucleus | 62.13 | 51.66 |
| HORVU0Hr1G013250.1 | Barley | cytosol | 33.89 | 47.66 |
| Os09t0466100-01 | Rice | nucleus | 49.83 | 42.13 |
| Zm00001d005928_P002 | Maize | nucleus | 50.5 | 42.11 |
| EER96886 | Sorghum | nucleus | 52.82 | 42.06 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 36.54 | 31.34 |
| HORVU5Hr1G059770.2 | Barley | nucleus | 29.9 | 25.21 |
| HORVU0Hr1G003280.5 | Barley | cytosol, mitochondrion, nucleus | 18.27 | 21.91 |
| HORVU7Hr1G117300.3 | Barley | cytosol | 11.3 | 20.61 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 23.92 | 20.51 |
| HORVU5Hr1G018180.1 | Barley | nucleus | 22.26 | 19.2 |
| HORVU2Hr1G030130.1 | Barley | plastid | 26.25 | 17.25 |
| HORVU4Hr1G013700.2 | Barley | plastid | 21.59 | 16.46 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G033350.3 | EnsemblPlantsGene:HORVU7Hr1G033350 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| ncoils:Coil | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF339 | PFAM:PF00134 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
| SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI000B478F53 | UniProt:A0A287VZ09 | MapMan:13.1.1.1.4 |
Description
No Description!
Coordinates
chrchr7H:+:68308817..68310017
Molecular Weight (calculated)
25708.0 Da
IEP (calculated)
7.529
GRAVY (calculated)
-0.041
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXP YCGGELAVEF PLPSEECVAR WVATEAEHMP REDYAERLRA GGVDLRVRVD AVDWIWKVHA
101: HYGFGPVTAC LALNYMDRFL SLYHLPEGKA WMTQLLSVAC LSLAAKMEET SVPQSMDLQA GDARYVFEAK TIQRMELLVL STLKWRMQAV TPFSYLDYFL
201: HQLSGGSAPS RQAVRDAAEL VLCISRGAHA RTHHLFRRHA SMPRDASTIL FCTISDAVGR FTXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXNKIC
301: R
101: HYGFGPVTAC LALNYMDRFL SLYHLPEGKA WMTQLLSVAC LSLAAKMEET SVPQSMDLQA GDARYVFEAK TIQRMELLVL STLKWRMQAV TPFSYLDYFL
201: HQLSGGSAPS RQAVRDAAEL VLCISRGAHA RTHHLFRRHA SMPRDASTIL FCTISDAVGR FTXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXNKIC
301: R
001: MAEFMEPNLV SNFDDEKSNS VDTRSIFQMG FPLESEEIVR EMIEKERQHS PRDDYLKRLR NGDLDFNVRI QALGWIWKAC EELQFGPLCI CLAMNYLDRF
101: LSVHDLPSGK AWTVQLLAVA CLSLAAKIEE TNVPELMQLQ VGAPMFVFEA KSVQRMELLV LNVLRWRLRA VTPCSYVRYF LSKINGYDQE PHSRLVTRSL
201: QVIASTTKGI DFLEFRASEI AAAVALSVSG EHFDKFSFSS SFSSLEKERV KKIGEMIERD GSSSSSQTPN NTVLQFKSRR YSHSLSTASV SSSLTSLS
101: LSVHDLPSGK AWTVQLLAVA CLSLAAKIEE TNVPELMQLQ VGAPMFVFEA KSVQRMELLV LNVLRWRLRA VTPCSYVRYF LSKINGYDQE PHSRLVTRSL
201: QVIASTTKGI DFLEFRASEI AAAVALSVSG EHFDKFSFSS SFSSLEKERV KKIGEMIERD GSSSSSQTPN NTVLQFKSRR YSHSLSTASV SSSLTSLS
Arabidopsis Description
CYCD4-2Cyclin-D4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.