Factsheet for HORVU6Hr1G077500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G040110.3
HORVU3Hr1G064490.1
HORVU3Hr1G064580.1
HORVU4Hr1G079310.1
HORVU4Hr1G080410.1
HORVU4Hr1G085830.4
HORVU5Hr1G031690.1
HORVU5Hr1G068770.6
HORVU6Hr1G013680.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10440.1	HORVU4Hr1G079310.1	AT2G27960.1	20706207
AT5G10440.1	HORVU4Hr1G079310.1	AT2G27970.1	20706207
AT5G10440.1	HORVU1Hr1G040110.3	AT2G32710.1	20706207
AT5G10440.1	HORVU3Hr1G064490.1	AT2G32710.1	20706207
AT5G10440.1	HORVU3Hr1G064580.1	AT2G32710.1	20706207
AT5G10440.1	HORVU4Hr1G080410.1	AT2G32710.1	20706207
AT5G10440.1	HORVU5Hr1G031690.1	AT2G32710.1	20706207
AT5G10440.1	HORVU5Hr1G068770.6	AT3G19150.1	20706207
AT5G10440.1	HORVU4Hr1G085830.4	AT3G48750.1	20706207
AT5G10440.1	HORVU6Hr1G013680.2	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G345300.1	Wheat	plastid	96.87	96.32
TraesCS6D01G294200.1	Wheat	nucleus	68.09	94.84
TraesCS6A01G314900.1	Wheat	nucleus	96.3	94.41
Zm00001d018128_P001	Maize	nucleus	75.21	74.37
Zm00001d052185_P001	Maize	nucleus	76.07	74.17
EES07560	Sorghum	nucleus	74.93	73.46
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	56.98	55.87
GSMUA_Achr6P02210_001	Banana	plastid	39.03	55.02
GSMUA_Achr9P15070_001	Banana	nucleus	54.7	54.86
GSMUA_Achr10P...	Banana	nucleus	49.86	54.52
GSMUA_Achr8P23430_001	Banana	nucleus	53.85	54.47
GSMUA_Achr3P06730_001	Banana	nucleus	53.85	54.47
GSMUA_Achr5P17920_001	Banana	nucleus	52.99	53.76
GSMUA_Achr5P22980_001	Banana	nucleus	52.99	53.3
GSMUA_Achr10P...	Banana	nucleus	52.14	53.2
GSMUA_Achr10P...	Banana	nucleus	52.99	52.39
GSMUA_Achr7P12850_001	Banana	nucleus	53.85	52.35
GSMUA_Achr3P21210_001	Banana	nucleus	51.0	50.71
VIT_18s0001g07220.t01	Wine grape	nucleus	51.0	50.42
GSMUA_Achr2P22330_001	Banana	nucleus	50.14	49.44
Solyc11g010460.1.1	Tomato	cytosol	43.59	49.04
KRH16827	Soybean	nucleus	49.0	48.45
KRH72435	Soybean	nucleus	48.72	47.9
GSMUA_Achr6P10260_001	Banana	cytosol	49.0	47.38
KRH45568	Soybean	nucleus	45.87	46.53
Solyc04g076040.2.1	Tomato	nucleus	47.01	46.48
CDY54717	Canola	nucleus	34.76	45.86
PGSC0003DMT400033588	Potato	nucleus	45.87	45.22
CDX81286	Canola	nucleus	34.19	45.11
KRG99448	Soybean	nucleus	45.58	44.69
PGSC0003DMT400037827	Potato	nucleus	43.59	44.48
KRH52917	Soybean	nucleus	44.44	44.32
KRH62196	Soybean	nucleus	44.44	44.32
Bra031858.1-P	Field mustard	nucleus	37.61	44.15
Solyc05g051410.2.1	Tomato	nucleus	43.02	43.9
Bra038518.1-P	Field mustard	nucleus	36.18	43.79
Solyc12g087900.1.1	Tomato	nucleus	39.32	43.67
KRH69654	Soybean	cytosol	30.2	43.62
Bra037817.1-P	Field mustard	nucleus	35.04	43.62
CDY13755	Canola	nucleus	36.18	43.49
AT5G65420.3	Thale cress	nucleus	39.32	43.4
VIT_00s0199g00210.t01	Wine grape	nucleus	43.59	43.34
CDY33959	Canola	nucleus	37.61	43.28
AT5G10440.1	Thale cress	nucleus	36.47	42.95
CDY37828	Canola	nucleus	37.61	42.72
KRH74510	Soybean	nucleus	43.87	42.66
PGSC0003DMT400088718	Potato	nucleus	37.32	42.26
CDY08795	Canola	nucleus	37.04	42.21
Bra024383.1-P	Field mustard	nucleus	36.75	41.88
CDX97009	Canola	nucleus	34.19	40.96
Bra009031.1-P	Field mustard	nucleus	34.19	40.4
CDX69832	Canola	nucleus	33.9	40.07
PGSC0003DMT400041637	Potato	nucleus	44.73	39.85
CDY14561	Canola	cytosol	36.75	39.69
AT2G22490.2	Thale cress	nucleus	39.6	38.4
Bra030232.1-P	Field mustard	nucleus	38.75	38.31
CDY25602	Canola	nucleus	38.75	38.2
CDX89480	Canola	nucleus	38.46	38.03
HORVU0Hr1G013250.1	Barley	cytosol	23.08	37.85
CDX76917	Canola	nucleus	37.89	37.57
HORVU7Hr1G033350.3	Barley	cytosol	31.34	36.54
HORVU5Hr1G059770.2	Barley	nucleus	31.91	31.37
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	20.8	29.08
HORVU2Hr1G030130.1	Barley	plastid	36.47	27.95
HORVU7Hr1G117300.3	Barley	cytosol	12.82	27.27
HORVU5Hr1G018180.1	Barley	nucleus	25.36	25.5
HORVU5Hr1G050270.8	Barley	cytosol	24.79	24.79
HORVU4Hr1G013700.2	Barley	plastid	24.22	21.52

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	UniProt:A0A287USS8	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:HORVU6Hr1G077500
EnsemblPlants:HORVU6Hr1G077500.1	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177
PANTHER:PTHR10177:SF337	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000B47E6C8	SEG:seg

Description

No Description!

Coordinates

chrchr6H:+:530729201..530731999

Molecular Weight (calculated)

38076.6 Da

IEP (calculated)

4.703

GRAVY (calculated)

0.119

Length

351 amino acids

Sequence
(BLAST)

001: MVPSGYDCAA SVLLCAEDNA AILCLDDDED DCSWAAAAAT PPRVAAAAAA EGFPADHPVQ SDECVAALVE TEKDHMPADG YPQMLLPRPG ALDLAAVRRD
101: AIDWIWKVIE HFNFAPLTAV LSVNYLDRFL SVYPLPEGKA WVTQLLAVAC LSLASKMEET YMPLPVDLQV VEANSAFEGR TIKRMELLVL STLKWRMQAV
201: TACSFIDYFL RKFNDHDAPS MLAFSRSTDL ILSTAKGADF LVFRPSEIAA SVALAAFGER NTSVVERATT TCKYINKERV LRCYELIQDK IAMGTIVLKS
301: AGSSMFSVPQ SPIGVLDAAA CLSQQSDDTA VGSPATCYQA SSATKRRRIG R

Best Arabidopsis Sequence Match ( AT5G65420.1 )
(BLAST)

001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS

Arabidopsis Description

CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.