Factsheet for Bra024383.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08795	Canola	nucleus	99.03	99.03
AT5G65420.3	Thale cress	nucleus	82.14	79.56
Bra037817.1-P	Field mustard	nucleus	70.45	76.95
Bra031858.1-P	Field mustard	nucleus	73.7	75.92
Bra009031.1-P	Field mustard	nucleus	62.34	64.65
Bra038518.1-P	Field mustard	nucleus	42.86	45.52
Solyc11g010460.1.1	Tomato	cytosol	44.81	44.23
PGSC0003DMT400037827	Potato	nucleus	48.38	43.31
KRH69654	Soybean	cytosol	33.77	42.8
Solyc05g051410.2.1	Tomato	nucleus	47.73	42.73
KRH45568	Soybean	nucleus	45.78	40.75
Bra030232.1-P	Field mustard	nucleus	46.75	40.56
GSMUA_Achr6P02210_001	Banana	plastid	32.79	40.56
VIT_00s0199g00210.t01	Wine grape	nucleus	46.43	40.51
KRH74510	Soybean	nucleus	47.4	40.44
KRG99448	Soybean	nucleus	45.78	39.39
GSMUA_Achr10P...	Banana	nucleus	40.91	39.25
GSMUA_Achr8P23430_001	Banana	nucleus	43.83	38.9
GSMUA_Achr9P15070_001	Banana	nucleus	44.16	38.86
GSMUA_Achr10P...	Banana	nucleus	42.53	38.08
GSMUA_Achr5P22980_001	Banana	nucleus	42.86	37.82
PGSC0003DMT400041637	Potato	nucleus	48.38	37.82
GSMUA_Achr5P17920_001	Banana	nucleus	42.21	37.57
GSMUA_Achr3P06730_001	Banana	nucleus	42.21	37.46
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	43.18	37.15
TraesCS6B01G345300.1	Wheat	plastid	42.53	37.11
HORVU6Hr1G077500.1	Barley	nucleus	41.88	36.75
Zm00001d018128_P001	Maize	nucleus	42.21	36.62
Zm00001d052185_P001	Maize	nucleus	42.53	36.39
TraesCS6A01G314900.1	Wheat	nucleus	41.88	36.03
GSMUA_Achr7P12850_001	Banana	nucleus	41.88	35.73
EES07560	Sorghum	nucleus	40.26	34.64
KXG19603	Sorghum	nucleus	37.01	32.76
TraesCS6D01G294200.1	Wheat	nucleus	24.03	29.37
Bra007901.1-P	Field mustard	nucleus	32.14	29.2
Bra036051.1-P	Field mustard	nucleus	29.55	25.78
Bra029992.1-P	Field mustard	nucleus	28.9	25.28
Bra012909.1-P	Field mustard	nucleus	26.62	25.0
Bra034198.1-P	Field mustard	nucleus	23.7	24.5
Bra034612.1-P	Field mustard	nucleus	29.22	24.46
Bra011501.1-P	Field mustard	nucleus	28.57	23.59
Bra017629.1-P	Field mustard	nucleus	27.92	23.37
Bra012146.1-P	Field mustard	nucleus	26.62	23.16
Bra017840.1-P	Field mustard	nucleus	24.03	21.7
Bra009612.1-P	Field mustard	cytosol	22.4	20.29
Bra005708.1-P	Field mustard	cytosol	20.45	18.37

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EnsemblPlantsGene:Bra024383	EnsemblPlants:Bra024383.1	EnsemblPlants:Bra024383.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:M4E6H9	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF337	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000253F50C
SEG:seg	:	:	:	:	:

Description

AT5G65420 (E=3e-130) CYCD4;1 | CYCD4;1 (CYCLIN D4;1); cyclin-dependent protein kinase regulator

Coordinates

chrA06:-:15404279..15406302

Molecular Weight (calculated)

34856.9 Da

IEP (calculated)

4.816

GRAVY (calculated)

-0.081

Length

308 amino acids

Sequence
(BLAST)

001: MADNLELSLL CTEITNVGDE DNVIILDKAP IVFPEISISQ MGFPSESDEF IREMMEKEKQ LLPSDDYISR LRSGDFDLNV RRREALNWIL KACEEHQFGP
101: MCICLSMNYL DRFLSVHDFP SGNTWAVQLL AVACLSLAAK IEETEVPMLI DLQAGHPQFV FEAKSVQRME LLVLNRLEWR LRAITPCSYI RYFLRKMSQC
201: DQEPSSTLIS RSLQVIASKT KGIDFLEFRP SEVAAAVALS VSGELYTVHF DNSSFSPLFS LLQKERVKKI GEMIERCESQ TPNGVLEVSA CCFSSKTHDS
301: SSPHTHLS

Best Arabidopsis Sequence Match ( AT5G65420.1 )
(BLAST)

001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS

Arabidopsis Description

CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.