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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003426.1-P
Bra005875.1-P
Bra005877.1-P
Bra007555.1-P
Bra008278.1-P
Bra013108.1-P
Bra013838.1-P
Bra014473.1-P
Bra018036.1-P
Bra018983.1-P
Bra025573.1-P
Bra027579.1-P
Bra029917.1-P
Bra030366.1-P
Bra030844.1-P
Bra034380.1-P
Bra038015.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G50070.1 Bra018983.1-P AT1G52730.1 20706207
AT3G50070.1 Bra030366.1-P AT1G52730.1 20706207
AT3G50070.1 Bra038015.1-P AT1G55820.1 20706207
AT3G50070.1 Bra034380.1-P AT2G27970.1 20706207
AT3G50070.1 Bra018036.1-P AT3G48750.1 20706207
AT3G50070.1 Bra029917.1-P AT3G48750.1 20706207
AT3G50070.1 Bra003426.1-P AT3G60750.1 20706207
AT3G50070.1 Bra007555.1-P AT3G60750.1 20706207
AT3G50070.1 Bra014473.1-P AT3G60750.1 20706207
AT3G50070.1 Bra013108.1-P AT4G09320.1 20706207
AT3G50070.1 Bra027579.1-P AT4G09320.1 20706207
AT3G50070.1 Bra030844.1-P AT4G09320.1 20706207
AT3G50070.1 Bra013838.1-P AT4G24820.1 20706207
AT3G50070.1 Bra005875.1-P AT5G06110.1 20706207
AT3G50070.1 Bra005877.1-P AT5G06110.1 20706207
AT3G50070.1 Bra008278.1-P AT5G06110.1 20706207
AT3G50070.1 Bra025573.1-P AT5G40460.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY02095 Canola nucleus 98.78 98.78
CDY23022 Canola nucleus 96.95 96.66
Bra029992.1-P Field mustard nucleus 85.37 79.55
AT3G50070.1 Thale cress nucleus 80.79 73.41
Bra036051.1-P Field mustard nucleus 77.13 71.67
Bra012146.1-P Field mustard nucleus 67.68 62.71
KRH04529 Soybean nucleus 53.05 46.9
KRH57973 Soybean nucleus 52.74 45.17
Solyc02g092980.2.1 Tomato nucleus 49.09 44.85
PGSC0003DMT400064307 Potato nucleus 48.48 43.8
PGSC0003DMT400031329 Potato nucleus 42.38 43.17
KRH77050 Soybean nucleus, plastid 43.9 43.11
KRH28424 Soybean nucleus 43.9 42.99
PGSC0003DMT400068629 Potato cytosol 31.1 42.5
Bra011501.1-P Field mustard nucleus 46.95 41.29
Bra017629.1-P Field mustard nucleus 45.43 40.49
Bra034612.1-P Field mustard nucleus 44.21 39.4
Solyc02g064900.1.1 Tomato nucleus 41.46 39.31
Solyc02g064860.1.1 Tomato nucleus 26.83 37.45
Solyc02g064910.1.1 Tomato nucleus 26.22 36.6
PGSC0003DMT400068627 Potato nucleus 34.15 36.36
PGSC0003DMT400011487 Potato nucleus 18.9 33.7
Bra038518.1-P Field mustard nucleus 27.74 31.38
Bra007901.1-P Field mustard nucleus 30.79 29.79
GSMUA_AchrUn_... Banana cytosol 28.66 29.65
Bra037817.1-P Field mustard nucleus 25.3 29.43
HORVU5Hr1G050270.8 Barley cytosol 30.79 28.77
TraesCS5B01G158400.1 Wheat cytosol 30.79 28.53
GSMUA_Achr1P09780_001 Banana cytosol 33.54 28.35
TraesCS5D01G165900.1 Wheat cytosol 30.49 28.25
TraesCS5A01G161000.1 Wheat cytosol 30.49 28.25
GSMUA_Achr4P20220_001 Banana nucleus 31.1 28.18
GSMUA_Achr2P05260_001 Banana nucleus 29.57 28.12
Os09t0111100-01 Rice cytosol 31.1 28.02
GSMUA_Achr3P01010_001 Banana nucleus 33.54 27.03
Bra031858.1-P Field mustard nucleus 24.39 26.76
Bra024383.1-P Field mustard nucleus 25.0 26.62
GSMUA_Achr3P13140_001 Banana nucleus 32.93 26.54
Bra030232.1-P Field mustard nucleus 28.66 26.48
Bra009031.1-P Field mustard nucleus 23.78 26.26
Zm00001d019696_P001 Maize cytosol 29.88 25.32
EER96424 Sorghum cytosol 28.96 24.87
Zm00001d005293_P001 Maize cytosol 28.96 24.3
Bra017840.1-P Field mustard nucleus 22.56 21.7
Bra034198.1-P Field mustard nucleus 19.51 21.48
Bra005708.1-P Field mustard cytosol 21.65 20.7
Bra009612.1-P Field mustard cytosol 20.73 20.0
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.4EnsemblPlantsGene:Bra012909EnsemblPlants:Bra012909.1EnsemblPlants:Bra012909.1-PInterPro:Cyclin-like
InterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634UniProt:M4D8U9PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771ScanProsite:PS00292
PANTHER:PTHR10177PANTHER:PTHR10177:SF216SMART:SM00385SMART:SM01332SUPFAM:SSF47954UniParc:UPI00025405F7
SEG:seg:::::
Description
AT3G50070 (E=3e-115) CYCD3;3 | CYCD3;3 (CYCLIN D3;3); cyclin-dependent protein kinase
Coordinates
chrA03:-:21582887..21584117
Molecular Weight (calculated)
38027.7 Da
IEP (calculated)
5.283
GRAVY (calculated)
-0.159
Length
328 amino acids
Sequence
(BLAST)
001: MALEEEEETQ NAPFCMLFCE EESCSVFEED ESVVKSPSFH LGFLYHDMLW DDDELLGLIS KQDELKPCLS DKALDEFLYL CRENALGWIF RVKGYYGFSS
101: LTALLAVNYF DRFITSRKFQ TDKPWMSQLT AVACLSLAAK VEEIRVPLLL DLQVGEARYV FEAKTIQRME LLILSTLQWR MHPVTPVSFF DHIIRRYSSN
201: SHQFLSRCES LLLSIVHDSR FLSYTPSVLA TAIMVSVARD FKEAEYESQL MTLLKVDPEK VNKCYELVLD HNPSKKRVMH ASLSSDGSNE SWVVSSEPLY
301: KRRRVHEQQM KLSSINRMFL DVFTSSPR
Best Arabidopsis Sequence Match ( AT3G50070.1 )
(BLAST)
001: MALEEEEESQ NAPFCVLDGL FCEEESEFHE QVDLCDESVE KFPFLNLGLS DHDMLWDDDE LSTLISKQEP CLYDEILDDE FLVLCREKAL DWIFKVKSHY
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
Arabidopsis Description
CYCD3-3CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.