CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90002
EER90152
EER91919
EER93180
EER99015
EER99399
EES04403
EES04724
KXG23408
KXG26091
KXG26586
KXG33680
KXG40187
KXG40336
OQU80099
OQU80908
OQU85258
OQU92158

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50070.1	EER90002	AT1G52730.1	20706207
AT3G50070.1	EES04724	AT1G52730.1	20706207
AT3G50070.1	KXG40187	AT2G27970.1	20706207
AT3G50070.1	EES04403	AT3G48750.1	20706207
AT3G50070.1	KXG40336	AT3G48750.1	20706207
AT3G50070.1	OQU80099	AT3G60750.1	20706207
AT3G50070.1	EER91919	AT4G09320.1	20706207
AT3G50070.1	EER99399	AT4G09320.1	20706207
AT3G50070.1	KXG23408	AT4G09320.1	20706207
AT3G50070.1	KXG26586	AT4G24820.1	20706207
AT3G50070.1	OQU85258	AT4G24820.1	20706207
AT3G50070.1	KXG26091	AT5G06110.1	20706207
AT3G50070.1	OQU92158	AT5G06110.1	20706207
AT4G34160.1	EER90152	AT1G76540.1	12857813
AT4G34160.1	OQU80908	AT1G76540.1	12857813
AT4G34160.1	KXG40187	AT2G27970.1	17426018
AT4G34160.1	KXG40187	AT2G27970.1	20706207
AT4G34160.1	EER99015	AT3G19150.1	17426018
AT4G34160.1	EER99015	AT3G19150.1	20706207
AT4G34160.1	EES04403	AT3G48750.1	11096103
AT4G34160.1	KXG40336	AT3G48750.1	11096103
AT4G34160.1	EES04403	AT3G48750.1	16517759
AT4G34160.1	KXG40336	AT3G48750.1	16517759
AT4G34160.1	EES04403	AT3G48750.1	16766674
AT4G34160.1	KXG40336	AT3G48750.1	16766674
AT4G34160.1	EES04403	AT3G48750.1	17426018
AT4G34160.1	KXG40336	AT3G48750.1	17426018
AT4G34160.1	EES04403	AT3G48750.1	20706207
AT4G34160.1	KXG40336	AT3G48750.1	20706207
AT4G34160.1	EER93180	AT5G02220.1	17426018
AT4G34160.1	KXG33680	AT5G02220.1	17426018
AT4G34160.1	EER93180	AT5G02220.1	20706207
AT4G34160.1	KXG33680	AT5G02220.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019696_P001	Maize	cytosol	90.05	88.89
Zm00001d005293_P001	Maize	cytosol	85.34	83.38
TraesCS5D01G165900.1	Wheat	cytosol	67.28	72.6
TraesCS5A01G161000.1	Wheat	cytosol	67.28	72.6
HORVU5Hr1G050270.8	Barley	cytosol	66.23	72.08
TraesCS5B01G158400.1	Wheat	cytosol	66.49	71.75
Os09t0111100-01	Rice	cytosol	63.61	66.76
GSMUA_Achr1P09780_001	Banana	cytosol	40.84	40.21
GSMUA_Achr4P20220_001	Banana	nucleus	37.96	40.06
GSMUA_Achr2P05260_001	Banana	nucleus	34.29	37.97
GSMUA_AchrUn_...	Banana	cytosol	31.41	37.85
GSMUA_Achr3P13140_001	Banana	nucleus	40.05	37.59
VIT_07s0129g01100.t01	Wine grape	nucleus	29.06	35.92
GSMUA_Achr3P01010_001	Banana	nucleus	37.43	35.14
KRH05626	Soybean	cytosol	18.59	33.02
PGSC0003DMT400039904	Potato	nucleus	27.75	32.92
Solyc12g088650.1.1	Tomato	nucleus	27.23	32.0
KRH15412	Soybean	cytosol	21.73	30.74
KRH28424	Soybean	nucleus	26.7	30.45
PGSC0003DMT400020648	Potato	nucleus	26.44	30.42
VIT_03s0180g00040.t01	Wine grape	nucleus	30.63	30.31
KRH04529	Soybean	nucleus	29.32	30.19
KRH57973	Soybean	nucleus	30.1	30.03
CDY30607	Canola	nucleus	27.49	29.75
Bra036051.1-P	Field mustard	nucleus	27.49	29.75
CDY57741	Canola	nucleus	28.27	29.59
CDX76265	Canola	nucleus	28.27	29.59
KRH77050	Soybean	nucleus, plastid	25.65	29.34
CDY17742	Canola	nucleus	27.23	29.3
CDX83112	Canola	nucleus	26.96	29.26
Bra029992.1-P	Field mustard	nucleus	26.96	29.26
CDY30606	Canola	cytosol, nucleus, plastid	13.09	29.07
CDX68573	Canola	nucleus	26.7	28.98
Bra012909.1-P	Field mustard	nucleus	24.87	28.96
CDY02095	Canola	nucleus	24.87	28.96
Bra034612.1-P	Field mustard	nucleus	27.75	28.8
PGSC0003DMT400066557	Potato	nucleus	26.96	28.77
VIT_18s0001g09920.t01	Wine grape	nucleus	28.01	28.76
PGSC0003DMT400068629	Potato	cytosol	18.06	28.75
KRH61348	Soybean	nucleus	26.18	28.65
Solyc01g107730.2.1	Tomato	nucleus	27.23	28.57
Solyc04g078470.2.1	Tomato	nucleus	25.13	28.57
CDY23022	Canola	nucleus	24.61	28.57
Solyc02g064900.1.1	Tomato	nucleus	25.65	28.32
CDY49278	Canola	nucleus	27.23	28.18
CDX72453	Canola	nucleus	26.44	28.06
Bra017629.1-P	Field mustard	nucleus	26.96	27.99
AT4G34160.1	Thale cress	nucleus	27.49	27.93
KRH52038	Soybean	nucleus	26.44	27.9
Solyc02g064910.1.1	Tomato	nucleus	17.02	27.66
Solyc02g064860.1.1	Tomato	nucleus	17.02	27.66
CDX75405	Canola	nucleus	26.96	27.61
Bra011501.1-P	Field mustard	nucleus	26.96	27.61
Solyc02g092980.2.1	Tomato	nucleus	25.92	27.58
CDY69708	Canola	nucleus	26.96	27.54
CDY01425	Canola	nucleus	25.39	27.4
Bra012146.1-P	Field mustard	nucleus	25.39	27.4
CDY12825	Canola	nucleus	25.65	27.37
PGSC0003DMT400064307	Potato	nucleus	25.92	27.27
AT3G50070.1	Thale cress	nucleus	25.65	27.15
PGSC0003DMT400031329	Potato	nucleus	22.77	27.02
KRG90996	Soybean	nucleus	27.75	26.97
KRH35760	Soybean	nucleus	28.01	26.62
EES14027	Sorghum	nucleus	25.39	26.01
EES17294	Sorghum	nucleus	24.61	25.9
EER91226	Sorghum	nucleus	24.08	24.86
AT5G67260.2	Thale cress	nucleus	26.18	24.75
EES07560	Sorghum	nucleus	23.04	24.58
PGSC0003DMT400011487	Potato	nucleus	11.78	24.46
PGSC0003DMT400068627	Potato	nucleus	19.63	24.35
EER96886	Sorghum	nucleus	23.82	24.07
EER97558	Sorghum	nucleus	21.73	24.06
OQU89443	Sorghum	nucleus	20.94	24.02
VIT_00s0194g00280.t01	Wine grape	mitochondrion	17.8	23.86
OQU92473	Sorghum	nucleus	21.47	23.7
KXG19603	Sorghum	nucleus	20.68	22.7
EER92677	Sorghum	nucleus	19.9	21.41
EER99528	Sorghum	cytosol	17.54	21.34
OQU84124	Sorghum	nucleus	18.85	16.86

Protein Annotations

EnsemblPlants:EER96424	EnsemblPlantsGene:SORBI_3002G144800	EntrezGene:8063883	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	PANTHER:PTHR10177	PANTHER:PTHR10177:SF342	PFAM:PF00134	ProteinID:EER96424	ProteinID:EER96424.1
RefSeq:XP_002459903.1	SEG:seg	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0001A836FA	UniProt:C5X7D4
MapMan:13.1.1.1.4	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:27054555..27056886

Molecular Weight (calculated)

40284.7 Da

IEP (calculated)

4.510

GRAVY (calculated)

-0.021

Length

382 amino acids

Sequence
(BLAST)

001: MAAFAAMFEP LYCPEEHLDL YHEEPGEGAD EQWPDQHGHQ QPAALDDELP ALFEALRAKE GLVLASEREE DGYGGAAGRE AAVGWASRAV ARLGFSALTS
101: ALAAAYLDRC FLPGGALRLG DQPWMARLAA VACVALAAKV EETRVPLLPD LQLCAAATSD ADAADPYVFE AKTVRRMELL VLSALGWRMH PVTPFSYLQP
201: VLTDAAMRLR NCEGVLLAVM ADWRWPRHRP SAWAAAALLT TAGGDDGDTE LLALINAPED ETAECAKIIS EVTAMSFLVC DVGASAGNKR KHAAARMYSP
301: PLSPSGVIGA LSCFSCESST STATTAAGVG PSWAPPAPVS MSSSPEPPGW APKRAAAAGV VKPHPLPPDE ESRDAWPSTC AA

Best Arabidopsis Sequence Match ( AT4G34160.1 )
(BLAST)

001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP

Arabidopsis Description

CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.