CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029407_P001	Maize	nucleus	82.37	82.37
Zm00001d044984_P001	Maize	mitochondrion	49.71	62.32
Zm00001d049334_P001	Maize	mitochondrion	44.8	53.08
Os03t0392000-00	Rice	cytosol, nucleus, plastid	34.68	48.78
EER97558	Sorghum	nucleus	47.69	47.83
Zm00001d038580_P001	Maize	plastid	45.66	47.45
EES14027	Sorghum	nucleus	40.75	37.8
EES07560	Sorghum	nucleus	38.44	37.15
EER96886	Sorghum	nucleus	38.73	35.45
KXG19603	Sorghum	nucleus	34.1	33.91
OQU89443	Sorghum	nucleus	27.75	28.83
EES17294	Sorghum	nucleus	26.88	25.62
EER92677	Sorghum	nucleus	25.43	24.79
EER99528	Sorghum	cytosol	21.97	24.2
EER91226	Sorghum	nucleus	25.72	24.05
EER96424	Sorghum	cytosol	23.7	21.47
OQU84124	Sorghum	nucleus	22.54	18.27

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	UniProt:A0A1Z5S976	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlants:OQU92473
ProteinID:OQU92473	ProteinID:OQU92473.1	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF207	SMART:SM00385	SMART:SM01332	EnsemblPlantsGene:SORBI_3001G349600	SUPFAM:SSF47954
UniParc:UPI000B8BB1E2	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:63918790..63921145

Molecular Weight (calculated)

38492.7 Da

IEP (calculated)

4.559

GRAVY (calculated)

-0.139

Length

346 amino acids

Sequence
(BLAST)

001: MGFSCARDGD FSFLLCEEDD VVGDIFGCNG EEEELPVLGM DMAFAALPSQ SDEVVASLME KEKEQLHSVA TGDYLQRLLS AGGLESSCRI AAIDWIKKAT
101: DYHYFGPLSA YLAVNYLDRY LSTNQIPADQ PWMPQLLSIA CLTIAAKMEE TVVPRRLDFH DQNQEDSNQK YTFELVTIQR MEIHVLGSLN WRMQAVTPFS
201: YINYFVDKFT EGKPLSCGFI SRCTEIILGT LEATKFLQFR PSEIAAAVVL SAAAESYVIV FSSALLAANI PVSKENVKRC HEALQEVGLV KKTDYSVMSP
301: SRVLDASCFS FKTDDKPIAG SSQGNNNNNN YNQAYAPPNK RTRLDI

Best Arabidopsis Sequence Match ( AT2G22490.1 )
(BLAST)

001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q

Arabidopsis Description

CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.