CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91497
EER95545
EES04403
EES14166
EES15619
KXG21076
KXG26019
KXG40187
KXG40336
OQU83580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03270.1	KXG40187	AT2G27960.1	20706207
AT4G03270.1	EER91497	AT2G32710.1	20706207
AT4G03270.1	EER95545	AT2G32710.1	20706207
AT4G03270.1	EES14166	AT3G12280.1	22921914
AT4G03270.1	KXG21076	AT3G12280.1	22921914
AT4G03270.1	KXG26019	AT3G12280.1	22921914
AT4G03270.1	OQU83580	AT3G12280.1	22921914
AT4G03270.1	EES04403	AT3G48750.1	20706207
AT4G03270.1	KXG40336	AT3G48750.1	20706207
AT4G03270.1	EES15619	AT3G54180.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	86.94	88.93
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	76.75	77.74
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	76.43	76.68
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	61.15	76.49
Os07t0556000-01	Rice	cytosol	73.89	72.5
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	77.71	71.55
HORVU7Hr1G117300.3	Barley	cytosol	29.94	56.97
GSMUA_Achr6P24270_001	Banana	nucleus	45.86	47.37
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	42.68	44.67
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	34.08	42.63
VIT_12s0134g00500.t01	Wine grape	nucleus	37.26	39.8
Bra034198.1-P	Field mustard	nucleus	33.76	35.57
CDY22116	Canola	nucleus	33.76	35.57
Solyc02g079370.2.1	Tomato	nucleus	33.44	35.35
KRH10729	Soybean	nucleus	30.57	35.29
PGSC0003DMT400057686	Potato	cytosol, nucleus, plasma membrane	33.44	35.0
GSMUA_Achr9P12120_001	Banana	nucleus	46.82	34.83
KRH21593	Soybean	nucleus	29.94	34.56
CDY21951	Canola	nucleus	32.8	34.11
KRH26876	Soybean	nucleus	33.76	33.65
VIT_00s0203g00160.t01	Wine grape	cytosol	33.76	33.54
KRH22479	Soybean	cytosol	33.76	33.54
PGSC0003DMT400012934	Potato	nucleus	31.85	33.0
Solyc07g054950.1.1	Tomato	nucleus	31.85	32.26
PGSC0003DMT400039033	Potato	nucleus	31.85	32.15
AT4G03270.1	Thale cress	nucleus	30.57	31.79
CDX90892	Canola	nucleus	15.29	31.58
Solyc03g006670.2.1	Tomato	nucleus	31.21	31.51
KRH56054	Soybean	cytosol, nucleus, plasma membrane	32.17	30.7
KRH25470	Soybean	nucleus	31.21	30.25
OQU89443	Sorghum	nucleus	29.3	27.63
EES07560	Sorghum	nucleus	28.98	25.42
EER97558	Sorghum	nucleus	27.07	24.64
KXG19603	Sorghum	nucleus	25.48	22.99
EER96886	Sorghum	nucleus	27.39	22.75
OQU92473	Sorghum	nucleus	24.2	21.97
EES14027	Sorghum	nucleus	25.48	21.45
EER92677	Sorghum	nucleus	21.34	18.87
EER91226	Sorghum	nucleus	21.97	18.65
EES17294	Sorghum	nucleus	21.02	18.18
EER96424	Sorghum	cytosol	21.34	17.54
OQU84124	Sorghum	nucleus	21.97	16.16

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EntrezGene:8081739	UniProt:C5XBH5	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_D_plant	InterPro:Cyclin_N	EnsemblPlants:EER99528	ProteinID:EER99528	ProteinID:EER99528.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0051726	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177
PANTHER:PTHR10177:SF240	SMART:SM00385	EnsemblPlantsGene:SORBI_3002G335900	SUPFAM:SSF47954	UniParc:UPI0001A8421F	RefSeq:XP_002463007.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:70382979..70385365

Molecular Weight (calculated)

33746.0 Da

IEP (calculated)

5.642

GRAVY (calculated)

-0.002

Length

314 amino acids

Sequence
(BLAST)

001: MATEEWALPD EEDAAYDYEF EFDLENPFTS PADEPIASLL DAEAHHAPSV SAAASAARRD AVAFISKVRF SGELAVHPRV AYLALNYVDR FLSKRQLACE
101: QQPWPRLLAL SCLSLAAKMQ RVATFSIDHI QRDEDFMFDA ATVRRMERWV LGALEWRARS VTPFAFLSFF LSVCYPPPQH PPQVAAIKAR AVDLLLRAQP
201: EVKMAEFSPS VVAASALLAA AREVAAANLP AFQAGVAACP FVNSEKLREC GEVLAAACGV GPGRAAASAD TPVTVLGHHR SASSASESDW TIGSATNGGG
301: GAKKRCMGPP SQWG

Best Arabidopsis Sequence Match ( AT4G03270.1 )
(BLAST)

001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY

Arabidopsis Description

CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.