CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91226	nucleus
EER92677	nucleus
EER96424	nucleus, nucleus
EES10011
EES11756	nucleus
EES13318
EES17294	nucleus
KXG22636	nucleus
OQU79846
OQU89443	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	EES11756	AT1G47870.1	20407024
AT3G12280.1	EES11756	AT1G47870.1	20706207
AT3G12280.1	OQU89443	AT1G70210.1	20407024
AT3G12280.1	EES13318	AT3G20740.1	15221456
AT3G12280.1	OQU79846	AT3G20740.1	15221456
AT3G12280.1	EES13318	AT3G20740.1	18812497
AT3G12280.1	OQU79846	AT3G20740.1	18812497
AT3G12280.1	KXG22636	AT3G24140.1	24571519
AT3G12280.1	EER96424	AT3G50070.1	20407024
AT3G12280.1	EES10011	AT3G55760.1	20706207
AT3G12280.1	EER96424	AT4G34160.1	20407024
AT3G12280.1	EER91226	AT4G37630.1	20407024
AT3G12280.1	EER92677	AT4G37630.1	20407024
AT3G12280.1	EES17294	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	94.37	93.35
Zm00001d052695_P016	Maize	nucleus	91.8	92.25
Os08t0538700-01	Rice	nucleus	85.57	85.74
TraesCS7B01G162700.4	Wheat	nucleus, plastid	80.53	79.82
TraesCS7A01G264800.1	Wheat	nucleus	80.43	79.73
TraesCS7D01G265600.3	Wheat	nucleus	80.14	78.81
HORVU7Hr1G055440.9	Barley	plastid	80.63	76.69
GSMUA_Achr8P00470_001	Banana	nucleus	68.68	69.15
VIT_04s0008g02780.t01	Wine grape	nucleus	62.25	62.62
KRH13310	Soybean	nucleus	61.56	61.99
KRH20664	Soybean	nucleus	61.66	61.54
KRH63701	Soybean	nucleus	61.36	61.24
PGSC0003DMT400030280	Potato	nucleus	60.87	60.63
Solyc09g091280.2.1	Tomato	cytosol	60.67	60.31
AT3G12280.1	Thale cress	nucleus	59.29	59.23
CDY52614	Canola	cytosol	58.6	58.83
CDY08440	Canola	nucleus	58.99	58.76
Bra034764.1-P	Field mustard	nucleus	58.89	58.66
CDY42141	Canola	cytosol	58.79	58.51
CDX73827	Canola	nucleus	57.91	57.96
CDY50559	Canola	nucleus	58.0	57.83
Bra038707.1-P	Field mustard	nucleus	57.91	57.51
Bra001446.1-P	Field mustard	nucleus	57.31	56.48
VIT_14s0068g00840.t01	Wine grape	cytosol	30.93	53.23
CDY00765	Canola	mitochondrion	58.1	52.69
OQU83580	Sorghum	plastid	43.38	50.58
KXG21076	Sorghum	plastid	43.38	50.11
CDY52391	Canola	nucleus	10.08	44.16
KXG26019	Sorghum	cytosol	10.87	40.89

Protein Annotations

Gene3D:1.10.472.10	Gene3D:1.10.472.140	MapMan:13.1.2.1	EntrezGene:8060923	UniProt:C5YHM0	ncoils:Coil
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	EnsemblPlants:EES14166	ProteinID:EES14166	ProteinID:EES14166.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726
PFAM:PF01857	PFAM:PF01858	PFAM:PF08934	PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22
InterPro:RBR	InterPro:RB_A	InterPro:RB_B	InterPro:RB_C	InterPro:RB_N	InterPro:RB_fam
SMART:SM00385	SMART:SM01367	SMART:SM01368	EnsemblPlantsGene:SORBI_3007G187700	SUPFAM:SSF47954	unigene:Sbi.20625
UniParc:UPI0001A87D2E	RefSeq:XP_002444671.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:62049634..62056133

Molecular Weight (calculated)

111871.0 Da

IEP (calculated)

8.879

GRAVY (calculated)

-0.253

Length

1012 amino acids

Sequence
(BLAST)

0001: MEGVAKPSTT SSGSGVTDGP SSAAASTEER FADLCKSKLG LDESTTRQAM QLFKETKNIL KSSVSSLGGG SPEEIERFWS ACVLYCVSRL SKAGRSKEDG
0101: SVSLCQILRA SKLNIVDFFK EMPQFCLKVA HVLTGLYGSD WEKRLELKEL QANVVHLSLL SRHYKRAYQE LFLSNDGKCS GNSSELINQE ASDYYRFGWL
0201: LFLALRIQTF SRFKDLVTST NELVSVLAVL IIHVPVRLRN FDIKDSSYFA KKSDRGVSLI ASLCEKYHTS EDELSKALEK TNTLIMDVLK KKPCPATSAC
0301: QQDNLSFIDP EGLTVFKDFL QGDSLKSSLL ILEKEYENAI NTKGELDERM FANDEDSLLG SGSLSGGAIN LPGTKRKYDV MASPAKSISS PNPMSPPRFC
0401: LSPKGSNFCN SKMAPITPVS TAMTTAKWLR STVSPLPSKP SGELLRFFSA CDKDLTDDIA HRAGIILGAI FTSSSFGERI CTNMRSANRM DAIWTEQRKM
0501: EALKLYYRVL ESMCRAESQI LSGNNLTSLL SNERFHRCMI ACSAELVLAT HKTVTMMFPA VLEKTGITAF DLSKVIEGFV RHEDTLPREL KRHLNSLEER
0601: LLESMAWEKG SSMYNSLIVA RPALSVEINR LGLLAEPMPS LDAIAAHHNI SLGGLPPLPF QKQDRLQDKD EVRSPKRACT ERRNVLVDSN SFRSPVKDII
0701: KSKLPPPLQS AFASPTRPNP AAGGETCAET GIGVFFSKIA KLAAIRIRSL CERLQLSQQV LERVYSLVQQ ILSQQTGLFF NRHIDQIILC SIYGVAKISQ
0801: LELSFKEIIF GYRKQPQCKP QVFRSVYVHW PPRSRNGKTG EDHVDIITFY NEVFIPAVKP LLVEVGPGAS PKKKEEEKGS ADVGPYPESP RLARFPNLPD
0901: MSPKKVSATH NVYVSPLRSS KMDTLLSPSS KSYYACVGES TYAFQSPSKD LKAINNRLNS VSSGKKVNGR LNFDVVSDLV VASSLSSDQN AKPAATEVVP
1001: IKTPVKCEPS DS

Best Arabidopsis Sequence Match ( AT3G12280.2 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSNR KRTLNFDAEA GMVSDSMVAN SLNLQNQNQN QNGSDASSSG
1001: GAAPLKTEPT DS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.