Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400009682 | nucleus |
| PGSC0003DMT400011487 | nucleus |
| PGSC0003DMT400031329 | nucleus |
| PGSC0003DMT400040287 | nucleus |
| PGSC0003DMT400040761 | nucleus |
| PGSC0003DMT400042064 | |
| PGSC0003DMT400049479 | |
| PGSC0003DMT400064307 | nucleus |
| PGSC0003DMT400066557 | nucleus |
| PGSC0003DMT400068627 | nucleus |
| PGSC0003DMT400068629 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g091280.2.1 | Tomato | cytosol | 97.54 | 97.35 |
| VIT_04s0008g02780.t01 | Wine grape | nucleus | 72.74 | 73.46 |
| KRH13310 | Soybean | nucleus | 71.16 | 71.94 |
| KRH20664 | Soybean | nucleus | 70.96 | 71.1 |
| KRH63701 | Soybean | nucleus | 70.47 | 70.61 |
| AT3G12280.1 | Thale cress | nucleus | 67.62 | 67.82 |
| CDY08440 | Canola | nucleus | 67.32 | 67.32 |
| Bra034764.1-P | Field mustard | nucleus | 67.22 | 67.22 |
| CDY52614 | Canola | cytosol | 66.63 | 67.16 |
| CDY42141 | Canola | cytosol | 67.13 | 67.06 |
| CDY50559 | Canola | nucleus | 66.63 | 66.7 |
| Bra038707.1-P | Field mustard | nucleus | 66.44 | 66.24 |
| CDX73827 | Canola | nucleus | 64.47 | 64.79 |
| GSMUA_Achr8P00470_001 | Banana | nucleus | 63.88 | 64.58 |
| Bra001446.1-P | Field mustard | nucleus | 64.17 | 63.49 |
| Os08t0538700-01 | Rice | nucleus | 61.71 | 62.08 |
| EES14166 | Sorghum | nucleus | 60.63 | 60.87 |
| Zm00001d052695_P016 | Maize | nucleus | 59.45 | 59.98 |
| Zm00001d031678_P003 | Maize | cytosol, nucleus, plastid | 59.74 | 59.34 |
| CDY00765 | Canola | mitochondrion | 65.16 | 59.32 |
| TraesCS7B01G162700.4 | Wheat | nucleus, plastid | 59.35 | 59.06 |
| TraesCS7A01G264800.1 | Wheat | nucleus | 59.25 | 58.96 |
| TraesCS7D01G265600.3 | Wheat | nucleus | 59.25 | 58.5 |
| HORVU7Hr1G055440.9 | Barley | plastid | 58.66 | 56.02 |
| GSMUA_Achr6P08220_001 | Banana | nucleus | 53.64 | 54.45 |
| Os11t0533500-01 | Rice | nucleus | 47.93 | 49.8 |
| TraesCS4A01G143200.1 | Wheat | plastid | 47.64 | 49.34 |
| TraesCS4D01G159600.1 | Wheat | cytosol, nucleus, plastid | 47.54 | 49.24 |
| TraesCS4B01G162200.1 | Wheat | nucleus | 47.44 | 49.13 |
| Zm00001d007407_P006 | Maize | cytosol, nucleus, plastid | 41.93 | 48.8 |
| HORVU4Hr1G039890.2 | Barley | cytosol, nucleus, plastid | 46.85 | 48.57 |
| OQU83580 | Sorghum | plastid | 40.94 | 47.93 |
| KXG21076 | Sorghum | plastid | 40.94 | 47.49 |
| CDY52391 | Canola | nucleus | 10.63 | 46.75 |
| Zm00001d052666_P014 | Maize | nucleus | 41.54 | 45.77 |
| KXG26019 | Sorghum | cytosol | 10.43 | 39.41 |
Protein Annotations
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011581]
Coordinates
chr9:+:57790564..57797434
Molecular Weight (calculated)
113537.0 Da
IEP (calculated)
8.196
GRAVY (calculated)
-0.268
Length
1016 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEELKNYSNS EENGSVDSLE VRFTDFCKNG LSMGESFMVE ARKLFMDSKH LLLSNNAAIG AITPEEVERY WFAFVLFSVK RLSENEARNP SNGNEGKGFD
0101: LCQILRGAKL NVLDFFKELP QFIVKVGPVL SNLYGSDWEK RLQAKELQTN FVHLSLLSKY YKRAYQELFL SSDNNEDKQS ATSNSIILLP QYYRFGWLLF
0201: LSLREHVFSR FKDLVTCTNG LVSVLAMLII HVPVRYRNFN INDSPRFVKK GDKVDLLVSL SSIYQTSIDD LRETMDKVNN LITVKLKKEP CLASECRAEN
0301: LDNIDADGLT YFENLLEESS LSSSICILEK DYNDAIQNKG ELDERIFVND EDSLLGSGSL SGGAVNMNGI KKKFDAMASP TKTITSPLSP YRSPGASNVN
0401: NNPNCGNSKM AATPVTTAMT TARWLRTVIA PLQPKPSPEL ERFLSACDRN VSADVIRRAH IILEAIFPSS GPGEHCAAGS LQSTSLMDNI WAEQRRSESL
0501: KLYYRVLQTM CVAESQILHA TNLTSLLTNE RFHRCMLACS AELVLATHKT VTMLFPAVLE RTGITSFDLS KVIESFIRHE ESLPRELRRH LNSLEERLLE
0601: SMVWEKGSSM YNSLTVAKPS LSAEINRLGL LAEPMPSLDA IAMHINLSSG NLPPVPPLQK SDLAPNGHNC DIRSPKRLCT EYRSVLVERN SFTSPVKDRF
0701: LALTNIKSKF PPPLQSAFAS PTRPNPGGGG ETCAETSINV FFGKIVKLAA VRINGMIERL QLSQQIRETV YCLFQKILNQ RTSLFFSRHI DQIILCSFYG
0801: VAKISQLNLT FKEIIYNYRK QPQCKPQVFR SVFVDWTSAR HNGKTGSEHV DIITFYNEMF IPSVKPLLVE LAPAGNEQKN NHVEKTKNDG QGPASPRPSS
0901: FPSLPDMSPK KVSAVHNVYV SPLRSSKMDA LISHSSKSYY ACVGESTHAY QSPSKDLTVI NNRLNGNRKL RGALNFDDVD AVGLVSDSIV ANTLYLQNGN
1001: CISSPRAAVK TEQPES
0101: LCQILRGAKL NVLDFFKELP QFIVKVGPVL SNLYGSDWEK RLQAKELQTN FVHLSLLSKY YKRAYQELFL SSDNNEDKQS ATSNSIILLP QYYRFGWLLF
0201: LSLREHVFSR FKDLVTCTNG LVSVLAMLII HVPVRYRNFN INDSPRFVKK GDKVDLLVSL SSIYQTSIDD LRETMDKVNN LITVKLKKEP CLASECRAEN
0301: LDNIDADGLT YFENLLEESS LSSSICILEK DYNDAIQNKG ELDERIFVND EDSLLGSGSL SGGAVNMNGI KKKFDAMASP TKTITSPLSP YRSPGASNVN
0401: NNPNCGNSKM AATPVTTAMT TARWLRTVIA PLQPKPSPEL ERFLSACDRN VSADVIRRAH IILEAIFPSS GPGEHCAAGS LQSTSLMDNI WAEQRRSESL
0501: KLYYRVLQTM CVAESQILHA TNLTSLLTNE RFHRCMLACS AELVLATHKT VTMLFPAVLE RTGITSFDLS KVIESFIRHE ESLPRELRRH LNSLEERLLE
0601: SMVWEKGSSM YNSLTVAKPS LSAEINRLGL LAEPMPSLDA IAMHINLSSG NLPPVPPLQK SDLAPNGHNC DIRSPKRLCT EYRSVLVERN SFTSPVKDRF
0701: LALTNIKSKF PPPLQSAFAS PTRPNPGGGG ETCAETSINV FFGKIVKLAA VRINGMIERL QLSQQIRETV YCLFQKILNQ RTSLFFSRHI DQIILCSFYG
0801: VAKISQLNLT FKEIIYNYRK QPQCKPQVFR SVFVDWTSAR HNGKTGSEHV DIITFYNEMF IPSVKPLLVE LAPAGNEQKN NHVEKTKNDG QGPASPRPSS
0901: FPSLPDMSPK KVSAVHNVYV SPLRSSKMDA LISHSSKSYY ACVGESTHAY QSPSKDLTVI NNRLNGNRKL RGALNFDDVD AVGLVSDSIV ANTLYLQNGN
1001: CISSPRAAVK TEQPES
0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSNR KRTLNFDAEA GMVSDSMVAN SLNLQNQNQN QNGSDASSSG
1001: GAAPLKTEPT DS
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSNR KRTLNFDAEA GMVSDSMVAN SLNLQNQNQN QNGSDASSSG
1001: GAAPLKTEPT DS
Arabidopsis Description
RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.