Factsheet for Zm00001d031678_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003439_P001	nucleus
Zm00001d004512_P001	nucleus
Zm00001d005293_P001	nucleus, nucleus
Zm00001d009715_P001	nucleus
Zm00001d013728_P001	nucleus
Zm00001d019696_P001	nucleus, nucleus
Zm00001d020353_P001	nucleus
Zm00001d024698_P002
Zm00001d028092_P001	nucleus
Zm00001d030894_P002	nucleus
Zm00001d033330_P001	nucleus
Zm00001d041345_P001	nucleus
Zm00001d048143_P003	nucleus
Zm00001d049608_P001
Zm00001d052977_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	Zm00001d004512_P001	AT1G47870.1	20407024
AT3G12280.1	Zm00001d004512_P001	AT1G47870.1	20706207
AT3G12280.1	Zm00001d020353_P001	AT1G70210.1	20407024
AT3G12280.1	Zm00001d024698_P002	AT3G20740.1	15221456
AT3G12280.1	Zm00001d049608_P001	AT3G20740.1	15221456
AT3G12280.1	Zm00001d024698_P002	AT3G20740.1	18812497
AT3G12280.1	Zm00001d049608_P001	AT3G20740.1	18812497
AT3G12280.1	Zm00001d009715_P001	AT3G24140.1	24571519
AT3G12280.1	Zm00001d005293_P001	AT3G50070.1	20407024
AT3G12280.1	Zm00001d019696_P001	AT3G50070.1	20407024
AT3G12280.1	Zm00001d052977_P001	AT3G55760.1	20706207
AT3G12280.1	Zm00001d005293_P001	AT4G34160.1	20407024
AT3G12280.1	Zm00001d019696_P001	AT4G34160.1	20407024
AT3G12280.1	Zm00001d003439_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d013728_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d028092_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d030894_P002	AT4G37630.1	20407024
AT3G12280.1	Zm00001d033330_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d041345_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d048143_P003	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14166	Sorghum	nucleus	93.35	94.37
Zm00001d052695_P016	Maize	nucleus	89.15	90.57
Os08t0538700-01	Rice	nucleus	83.77	84.85
TraesCS7B01G162700.4	Wheat	nucleus, plastid	78.49	78.65
TraesCS7A01G264800.1	Wheat	nucleus	78.4	78.55
TraesCS7D01G265600.3	Wheat	nucleus	78.2	77.75
HORVU7Hr1G055440.9	Barley	plastid	78.49	75.47
GSMUA_Achr8P00470_001	Banana	nucleus	67.94	69.15
VIT_04s0008g02780.t01	Wine grape	nucleus	61.0	62.03
KRH13310	Soybean	nucleus	60.12	61.19
KRH20664	Soybean	nucleus	60.22	60.75
KRH63701	Soybean	nucleus	59.92	60.45
PGSC0003DMT400030280	Potato	nucleus	59.34	59.74
Solyc09g091280.2.1	Tomato	cytosol	59.04	59.33
AT3G12280.1	Thale cress	nucleus	58.06	58.64
CDY08440	Canola	nucleus	57.67	58.07
Bra034764.1-P	Field mustard	nucleus	57.58	57.97
CDY52614	Canola	cytosol	57.09	57.94
CDY42141	Canola	cytosol	57.48	57.82
CDX73827	Canola	nucleus	56.6	57.27
CDY50559	Canola	nucleus	56.6	57.04
Bra038707.1-P	Field mustard	nucleus	56.5	56.72
Bra001446.1-P	Field mustard	nucleus	56.01	55.79
VIT_14s0068g00840.t01	Wine grape	cytosol	30.4	52.89
CDY00765	Canola	mitochondrion	56.79	52.06
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	43.5	50.97
Zm00001d052666_P014	Maize	nucleus	43.21	47.94
CDY52391	Canola	nucleus	10.07	44.59

Protein Annotations

Gene3D:1.10.472.10	Gene3D:1.10.472.140	MapMan:13.1.2.1	EntrezGene:732723	UniProt:A0A1D6KKK4	ncoils:Coil
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0051726	ProteinID:ONM03455.1	ProteinID:ONM03457.1	PFAM:PF01857
PFAM:PF01858	PFAM:PF08934	PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	InterPro:RBR
InterPro:RB_A	InterPro:RB_B	InterPro:RB_C	InterPro:RB_N	InterPro:RB_fam	SMART:SM00385
SMART:SM01367	SMART:SM01368	SUPFAM:SSF47954	UniParc:UPI000843F178	EnsemblPlantsGene:Zm00001d031678	EnsemblPlants:Zm00001d031678_P003
EnsemblPlants:Zm00001d031678_T003	SEG:seg	:	:	:	:

Description

retinoblastoma family3 retinoblastoma family3

Coordinates

chr1:-:198531549..198538490

Molecular Weight (calculated)

113015.0 Da

IEP (calculated)

8.783

GRAVY (calculated)

-0.264

Length

1023 amino acids

Sequence
(BLAST)

0001: MEGFAKPSTS SGSGVTVRAS VAAASIEERF ADLCKAKLGL DESTTRQAMQ LLKETNNILK SSMSSLGGGS PEEIERFWSA CVLYCVSRLS KAGRSKEDGS
0101: VSLCQILRAS KLNIVDFFKE MPQFCIKVAH ILTGLYGSDW EKRLELKELQ ANVVHLSLLS SYYKRAYQEL FLSNDGKSSD NSSESNNQEA SDYYRFGWLL
0201: FLVLRIQTFS RFKDLVTSTN ELVSVLAVLI IHVPVRLRNF DIKDSSYFGK KSDRGVSLIA SLCEKHHTSE DELSKALEKT NTLIMDILKK KPCPATSACQ
0301: QDNLSFIDPE GLTVFKDLLQ GDSLKPSLII LEKEYENAIN TKGELDERMF ANDEDSLLGS GSLSGGAINL PGTKRKYDVM ASPAKSISSP NPMSPPRFCL
0401: SPKGNGFCNS KMAPSTPVST AMTTAKWLRN TVSPLPSRPS GELLRFFSAC DKDLTDDIAH RAGIILGAIF TSSSFGERIC TSMRSASRMD AIWTEQRKME
0501: ALKLYYRVLE SMCRAESQIL SGNNLTSLLS NERFHRCMIA CSAELVLATH KTVTMMFPAV LEKTGITAFD LSKVIEGFVR HEDTLPRELK RHLNSLEERL
0601: LESMAWEKGS SMYNSLIVAR PALSVEISRL GLLAEPMPSL DAIAAHHNIS LGGLPPLPFQ KQERLQDKDE VRSPKRACTE RRNVLVDSNS LRSPVKDIIK
0701: PKLPPLQSAF ASPTRPNPAA GGETCAETGI GVFFSKISKL AAIRIRSLCE RLQLPQQVLE RVYSLVQQIL SQQTGLFFNR HIDQIILCSI YGVAKISQLE
0801: LSFKEIIFGY RKQPQCKPQV FRSVYVHWPP RSRNGKTGED HVDIITFYNE VFIPAVKSLL VEVGPGASAS PKKKEEEKGP ADVGPFPESP RLARFPNLPD
0901: MSPKKVSATH NVYVSPLRSS KMDTLLSPSS KSYYACVGES TYAFQSPSKD LKAINNRLNR QDHQKSSSLE VCCVSGGKKV SGRLNFDVVS DLVVASSLGS
1001: DRDAKPAADP AKTTPVKCEP SDS

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.