Factsheet for Zm00001d004512_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003183_P001
Zm00001d003184_P001
Zm00001d003185_P001
Zm00001d003186_P001
Zm00001d003187_P002
Zm00001d003439_P001
Zm00001d003531_P002
Zm00001d007407_P006
Zm00001d013728_P001
Zm00001d015715_P001
Zm00001d025754_P001
Zm00001d028092_P001
Zm00001d030894_P002
Zm00001d031678_P003
Zm00001d033330_P001
Zm00001d041345_P001
Zm00001d044455_P001
Zm00001d048143_P003
Zm00001d052666_P014
Zm00001d052695_P016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47870.1	Zm00001d007407_P006	AT3G12280.1	22921914
AT1G47870.1	Zm00001d031678_P003	AT3G12280.1	22921914
AT1G47870.1	Zm00001d052666_P014	AT3G12280.1	22921914
AT1G47870.1	Zm00001d052695_P016	AT3G12280.1	22921914
AT1G47870.1	Zm00001d003531_P002	AT3G17760.1	20706207
AT1G47870.1	Zm00001d003439_P001	AT4G37630.1	20407024
AT1G47870.1	Zm00001d013728_P001	AT4G37630.1	20407024
AT1G47870.1	Zm00001d028092_P001	AT4G37630.1	20407024
AT1G47870.1	Zm00001d030894_P002	AT4G37630.1	20407024
AT1G47870.1	Zm00001d033330_P001	AT4G37630.1	20407024
AT1G47870.1	Zm00001d041345_P001	AT4G37630.1	20407024
AT1G47870.1	Zm00001d048143_P003	AT4G37630.1	20407024
AT1G47870.1	Zm00001d003183_P001	AT5G25460.1	20706207
AT1G47870.1	Zm00001d003184_P001	AT5G25460.1	20706207
AT1G47870.1	Zm00001d003185_P001	AT5G25460.1	20706207
AT1G47870.1	Zm00001d003186_P001	AT5G25460.1	20706207
AT1G47870.1	Zm00001d003187_P002	AT5G25460.1	20706207
AT1G47870.1	Zm00001d015715_P001	AT5G25460.1	20706207
AT1G47870.1	Zm00001d025754_P001	AT5G25460.1	20706207
AT1G47870.1	Zm00001d044455_P001	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11756	Sorghum	plastid	72.22	68.98
Os04t0112200-00	Rice	nucleus, plastid	49.15	47.92
TraesCS2B01G043500.1	Wheat	plastid	46.37	46.97
TraesCS2D01G031400.1	Wheat	plastid	45.51	46.41
TraesCS2A01G031800.1	Wheat	plastid	43.59	45.13
Bra014096.1-P	Field mustard	nucleus	28.85	36.78
CDY16998	Canola	nucleus	28.85	36.78
CDY17797	Canola	nucleus	29.27	36.34
HORVU2Hr1G004820.2	Barley	cytosol	9.62	36.0
KRH61047	Soybean	cytosol, nucleus, plastid	26.28	34.65
GSMUA_Achr4P17950_001	Banana	nucleus	29.7	34.41
AT1G47870.1	Thale cress	nucleus, plastid	29.06	34.34
Zm00001d050664_P002	Maize	mitochondrion, plastid	27.78	34.21
PGSC0003DMT400009682	Potato	plastid	28.21	33.0
Zm00001d016737_P002	Maize	mitochondrion, plastid	31.41	31.55
VIT_18s0001g14110.t01	Wine grape	nucleus	30.13	31.4
KRH51709	Soybean	nucleus	28.42	31.22
Solyc04g081350.2.1	Tomato	plastid	26.28	30.98
Zm00001d003755_P001	Maize	nucleus	24.15	30.79
Zm00001d023465_P002	Maize	cytosol	29.7	30.55
KRH07603	Soybean	cytosol	10.68	26.45

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	EMBL:BT064737	UniProt:C0P8W8	ncoils:Coil
InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388
EMBL:KJ726878	ProteinID:ONM19053.1	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF49
SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI000194B245	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
EnsemblPlantsGene:Zm00001d004512	EnsemblPlants:Zm00001d004512_P001	EnsemblPlants:Zm00001d004512_T001	SEG:seg	:	:

Description

E2F-DP-transcription factor 25Transcription factor E2FC

Coordinates

chr2:+:115910521..115916044

Molecular Weight (calculated)

50678.9 Da

IEP (calculated)

5.886

GRAVY (calculated)

-0.603

Length

468 amino acids

Sequence
(BLAST)

001: MDGASSSLPL PQPPPQVYLR RPVPPPGPPL QAAPRVQPFS APAPIPIFSS KPRAAVRSPI PPPHLPAAVT SAPAPLAATA EAPSRPPPAS TDQPPQQQTG
101: AMPPPPAPAP AGKGGPKPKA QLNEQNSGEY SQSENNVVET AQGHDKETTP GPVKATKRIK KLKASKHNLN NTNSGAIEGD ADPSLSSLNH CRYDSSLSLL
201: TKKFINLLQG AEDGALDLNK AAETLEVQKR RIYDITNVLE GVHLIEKGLK NMVRWKGFDI SKPKDIERQI SSLKEELESL YDEELRLDDE IREAKEKLQA
301: LALDGDKRKS LYLLKEDINK IPHFQRSTMI AINAPRGTCV EVPDPNADQY MYGNLGLQEK HYKIVLRSSM GPVDCYLISG DHEDIFNQGQ LVAADRLKPA
401: VATDSSQDLQ QMDCDPNQAS NGGCMHAAEP SRKQEIGILR IVPSDADADA DYWLASGVDV SMTDAWGT

Best Arabidopsis Sequence Match ( AT1G47870.2 )
(BLAST)

001: MAATSNSGED PTLSYHHRSP FRFELLQSIS SSDPRYSSLT PSSTNRPFSV SQSLPNSQLS PLISPHWDDS YSQITQKVKS RKNHRIQLGS IANMSGGESI
101: DIAKVIVKQE SSPQNVKRVY NKSKGGTKLL KAGKRMANGE VQNGGLNGAS INCRYDSSLG LLTKKFVKLI QEAEDGTLDL NYCAVVLEVQ KRRIYDITNV
201: LEGIGLIEKT TKNHIRWKGA DNLGQKDLGD QISRLKSEVE SMQSEESRLD DLIRERQEAL RSLEEDDYCR RYMFMTEEDI TSLPRFQNQT LLAIKAPTAS
301: YIEVPDPDEM SFPQQYRMVI RSRMGPIDVY LLSKYKGDSA ETSDKLGNES DQKAPVGVDT PSLKIVTSDT DLKADYWFES DAEVSLTDLW SNFNS

Arabidopsis Description

E2FCE2FC [Source:UniProtKB/TrEMBL;Acc:A0A178WB46]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.