Factsheet for Os04t0112200-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0611000-01
Os02t0205200-01
Os02t0527500-00
Os03t0203800-01
Os03t0328501-00
Os03t0617500-01
Os04t0447400-01
Os04t0494600-01
Os04t0494800-01
Os04t0494900-01
Os04t0494950-01
Os04t0495000-00
Os07t0132600-00
Os08t0538700-01
Os11t0533500-01
Os12t0588800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47870.1	Os08t0538700-01	AT3G12280.1	22921914
AT1G47870.1	Os11t0533500-01	AT3G12280.1	22921914
AT1G47870.1	Os04t0447400-01	AT3G17760.1	20706207
AT1G47870.1	Os03t0203800-01	AT4G37630.1	20407024
AT1G47870.1	Os03t0617500-01	AT4G37630.1	20407024
AT1G47870.1	Os12t0588800-01	AT4G37630.1	20407024
AT1G47870.1	Os01t0611000-01	AT5G25460.1	20706207
AT1G47870.1	Os02t0205200-01	AT5G25460.1	20706207
AT1G47870.1	Os02t0527500-00	AT5G25460.1	20706207
AT1G47870.1	Os03t0328501-00	AT5G25460.1	20706207
AT1G47870.1	Os04t0494600-01	AT5G25460.1	20706207
AT1G47870.1	Os04t0494800-01	AT5G25460.1	20706207
AT1G47870.1	Os04t0494900-01	AT5G25460.1	20706207
AT1G47870.1	Os04t0494950-01	AT5G25460.1	20706207
AT1G47870.1	Os04t0495000-00	AT5G25460.1	20706207
AT1G47870.1	Os07t0132600-00	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G031800.1	Wheat	plastid	50.21	53.32
TraesCS2B01G043500.1	Wheat	plastid	50.62	52.6
TraesCS2D01G031400.1	Wheat	plastid	49.38	51.63
EES11756	Sorghum	plastid	51.25	50.2
Zm00001d004512_P001	Maize	plastid	47.92	49.15
HORVU2Hr1G004820.2	Barley	cytosol	11.04	42.4
Bra014096.1-P	Field mustard	nucleus	29.17	38.15
CDY16998	Canola	nucleus	29.17	38.15
CDY17797	Canola	nucleus	29.38	37.4
AT1G47870.1	Thale cress	nucleus, plastid	30.83	37.37
KRH61047	Soybean	cytosol, nucleus, plastid	27.08	36.62
GSMUA_Achr4P17950_001	Banana	nucleus	30.42	36.14
Os04t0416100-01	Rice	nucleus	23.75	35.74
Os02t0537500-01	Rice	mitochondrion	34.38	34.74
Os12t0158800-01	Rice	nucleus	31.67	34.08
VIT_18s0001g14110.t01	Wine grape	nucleus	30.0	32.07
Solyc04g081350.2.1	Tomato	plastid	26.46	31.99
PGSC0003DMT400009682	Potato	plastid	26.25	31.5
KRH51709	Soybean	nucleus	27.29	30.75
KRH07603	Soybean	cytosol	10.21	25.93

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	UniProt:A0A0P0W616	ProteinID:BAS87584.1	ncoils:Coil
InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0000902	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0005730	GO:GO:0006139
GO:GO:0006259	GO:GO:0006351	GO:GO:0006355	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0019748	GO:GO:0019760
GO:GO:0042023	GO:GO:0043565	GO:GO:0044212	GO:GO:0046982	GO:GO:0046983	GO:GO:0051301
GO:GO:0051782	InterPro:IPR036388	EnsemblPlantsGene:Os04g0112200	EnsemblPlants:Os04t0112200-00	PFAM:PF02319	PFAM:PF16421
PRINTS:PR01217	PANTHER:PTHR12081	PANTHER:PTHR12081:SF49	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
UniParc:UPI0003939A60	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

E2F transcription factor 4Similar to OSIGBa0127D24.8 protein. (Os04t0112200-00)

Coordinates

chr4:-:706806..711491

Molecular Weight (calculated)

52173.3 Da

IEP (calculated)

4.934

GRAVY (calculated)

-0.618

Length

480 amino acids

Sequence
(BLAST)

001: MDGSAAIPPR PAPTPPAPAP APPQVFLRRS VLPPPPAPHH APPPPGAHVH YFRAASPIPI FRAAASSRPP RPPPPSTTTA PPPPAAPAVT PARPPPQQPA
101: VAVAAPPPAT TMATATEEVA APATGNPMAN AAVSQWNEKN ERETVQSEVA KGETVQGPDK ECTTGAVKGI KRPRKPKGFK KGSLRSNEGD AGPSLFSPNN
201: CRYDSSLGLL TKKFINLLEG AEDGTLDLNK AAETLEVQKR RIYDITNVLE GVDLIEKTLK NMIRWKGFDM SKPKERERQI SALKEEIESL YDEESRLDDE
301: IMEAQEKLNA LRVDEDRRKL LYVSKEDINA IPRFQGSTLI AVNAPRGTYI EVPDPNLDMD IYKDLDNQEK HYQIVFRSAM GPVDCFLISN HQETFNADQQ
401: MADNLDAAVT SGSSQAPQQM DYVQASEIGE SNGVREHTSE PSKRDDPVPG IVKIVPSDDI AADYWLSSDA DVSMTDTWGT

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.