Factsheet for Os04t0447400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
nucleus 1
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G078560.1	Barley	plastid	90.7	90.33
EES12248	Sorghum	plastid	90.91	90.16
TraesCS2D01G313500.1	Wheat	plastid	89.88	89.51
TraesCS2A01G315300.1	Wheat	plastid	89.46	89.09
Zm00001d003531_P002	Maize	plastid	89.67	88.75
TraesCS2B01G333700.1	Wheat	plastid	90.7	85.58
GSMUA_Achr8P22810_001	Banana	cytosol	78.93	80.59
Os03t0720300-01	Rice	plastid	79.75	78.46
Os03t0236200-01	Rice	plasma membrane	78.51	77.24
Os08t0465800-01	Rice	cytosol, extracellular, plasma membrane, plastid	78.72	76.66
GSMUA_Achr7P02370_001	Banana	cytosol	78.72	76.35
KRH09492	Soybean	cytosol	77.48	75.15
KRH38971	Soybean	cytosol	77.07	74.9
AT3G17760.1	Thale cress	cytosol	76.45	74.9
PGSC0003DMT400079706	Potato	cytosol	77.27	74.5
Solyc03g098240.2.1	Tomato	plastid	77.27	74.5
VIT_17s0000g00920.t01	Wine grape	cytosol	77.48	74.26
Bra022241.1-P	Field mustard	cytosol	75.0	74.08
Bra021272.1-P	Field mustard	cytosol	75.0	73.78
Os04t0447800-01	Rice	cytosol, plasma membrane	71.49	69.2
AT3G17720.1	Thale cress	mitochondrion	26.86	67.01
CDX87977	Canola	cytosol	29.55	62.72
Os05t0421750-00	Rice	mitochondrion	17.36	32.18
Os01t0100900-01	Rice	nucleus	19.42	17.44

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EntrezGene:4335973	EMBL:AK070858	ProteinID:BAF14829.1	ProteinID:BAS89414.1	ProteinID:CAD40881.2
ProteinID:EAZ30883.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752
GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	EnsemblPlantsGene:Os04g0447400	EnsemblPlants:Os04t0447400-01	PFAM:PF00282
PANTHER:PTHR43321	PANTHER:PTHR43321:SF1	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	UniProt:Q7XV14
SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI00001B0C07	RefSeq:XP_015634458.1	SEG:seg	:

Description

Similar to Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2). (Os04t0447400-01)

Coordinates

chr4:-:22314079..22316433

Molecular Weight (calculated)

54428.3 Da

IEP (calculated)

5.902

GRAVY (calculated)

-0.197

Length

484 amino acids

Sequence
(BLAST)

001: MALSTAQTGE SMHSSTFASR YVRTALPRFR MPEKSIPKDA AYQIINDELM LDGNPRLNLA SFVTTWMEPE CDKLMMAAIN KNYVDMDEYP VTTELQNRCV
101: NMIAHLFNAP IGDDETAVGV GTVGSSEAIM LAGLAFKRKW QNRMKAEGKP HDKPNIVTGA NVQVCWEKFA RYFEVELKEV KLTQGYYVMN PEKAVEMVDE
201: NTICVAAILG STLNGEFEDV KMLNDLLTAK NAETGWNTPI HVDAASGGFI APFIYPELEW DFRLPLVKSI NVSGHKYGLV YAGVGWVIWR NKEDLPDELI
301: FHINYLGADQ PTFTLNFSKG SNQIIAQYYQ LIRLGFEGYK DIMQNCRDNA TVLREGIEKT GHFDVVSKDS GVPLVAFSLK DSSRYTVFEV AESLRRFGWI
401: VPAYTMPADA EHVAVMRVVI REDFSRGLAE RLITDLTKTV ADMDAHAVKK AAAEPAKKTV REIEKEVTTY WRSFVARKKS SLVC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.