CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003531_P002	Maize	plastid	96.93	96.73
Os04t0447400-01	Rice	plasma membrane	90.16	90.91
HORVU2Hr1G078560.1	Barley	plastid	90.37	90.74
TraesCS2D01G313500.1	Wheat	plastid	89.34	89.71
TraesCS2A01G315300.1	Wheat	plastid	88.93	89.3
TraesCS2B01G333700.1	Wheat	plastid	89.96	85.58
GSMUA_Achr8P22810_001	Banana	cytosol	78.07	80.38
EER93555	Sorghum	cytosol	79.51	78.7
EER95206	Sorghum	cytosol	77.87	77.55
GSMUA_Achr7P02370_001	Banana	cytosol	77.66	75.95
Solyc03g098240.2.1	Tomato	plastid	78.07	75.9
KRH09492	Soybean	cytosol	77.46	75.75
KRH38971	Soybean	cytosol	77.25	75.7
PGSC0003DMT400079706	Potato	cytosol	77.87	75.7
AT3G17760.1	Thale cress	cytosol	76.43	75.51
Bra022241.1-P	Field mustard	cytosol	75.41	75.1
VIT_17s0000g00920.t01	Wine grape	cytosol	77.25	74.65
Bra021272.1-P	Field mustard	cytosol	75.2	74.59
EES10890	Sorghum	cytosol	70.7	67.91
AT3G17720.1	Thale cress	mitochondrion	26.84	67.53
OQU80616	Sorghum	plastid	79.3	64.72
CDX87977	Canola	cytosol	29.71	63.6
EES02668	Sorghum	cytosol	19.88	18.2

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EntrezGene:8065836	UniProt:C5Y9A0	EnsemblPlants:EES12248	ProteinID:EES12248	ProteinID:EES12248.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF1	MetaCyc:PWY-4321
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	EnsemblPlantsGene:SORBI_3006G095700	SUPFAM:SSF53383	unigene:Sbi.5699
TIGRFAMs:TIGR01788	UniParc:UPI0001A8726A	RefSeq:XP_002447920.1	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:46573968..46576857

Molecular Weight (calculated)

54744.6 Da

IEP (calculated)

5.690

GRAVY (calculated)

-0.216

Length

488 amino acids

Sequence
(BLAST)

001: MALSTANTNA AESHLHCSTF ASRYVRTALP RFKMPEQSIP KEAAYQIIND ELMLDGNPRL NLASFVTTWM EPECDKLIQS SINKNYVDMD EYPVTTELQN
101: RCVNMIAHLF NAPIGDDETA VGVGTVGSSE AIMLAGLAFK RKWQNKMKAA GKPYDKPNIV TGANVQVCWE KFARYFEVEL KEVKLREGYY VMDPEKAAEM
201: VDENTICVAA ILGSTLNGEF EDVKMLNDLL AAKNAETGWD TPIHVDAASG GFIAPFIYPE LEWDFRLPLV KSINVSGHKY GLVYAGVGWV IWRSKDDLPD
301: ELIFHINYLG ADQPTFTLNF SKGSSQIIAQ YYQLIRLGFE GYKDVMQNCR DNATVLREGI EKMGYFDVVS KDSGVPLVAF SLKDSSKYTV FEVAESLRRF
401: GWIVPAYTMP ADAEHVAVMR VVIREDFSRG LAERLIADLG KTMADMDAHA GKKAPDHPKK SVHDIEKEVT TFWRRLVANN KKKSSMVC

Best Arabidopsis Sequence Match ( AT2G02010.2 )
(BLAST)

001: MKRHILSTIY TICSSSSNST HSSSTTKQKH YYTFFPLVHF KPKNQSSKLK EDMVLSKTVS ESDVSIHSTF ASRYVRNSLP RFEMPENSIP KEAAYQIIND
101: ELMLDGNPRL NLASFVTTWM EPECDKLMME SINKNYVDMD EYPVTTELQN RCVNMIARLF NAPLGDGEAA VGVGTVGSSE AIMLAGLAFK RQWQNKRKAQ
201: GLPYDKPNIV TGANVQVCWE KFARYFEVEL KEVNLREDYY VMDPVKAVEM VDENTICVAA ILGSTLTGEF EDVKLLNDLL VEKNKQTGWD TPIHVDAASG
301: GFIAPFLYPE LEWDFRLPLV KSINVSGHKY GLVYAGIGWV VWRTKTDLPD ELIFHINYLG ADQPTFTLNF SKGSSQVIAQ YYQLIRLGFE GYRNVMDNCR
401: ENMMVLRQGL EKTGRFKIVS KENGVPLVAF SLKDSSRHNE FEVAHTLRRF GWIVPAYTMP ADAQHVTVLR VVIREDFSRT LAERLVADFE KVLHELDTLP
501: ARVHAKMANG KVNGVKKTPE ETQREVTAYW KKLLETKKTN KNTIC

Arabidopsis Description

GAD4glutamate decarboxylase 4 [Source:TAIR;Acc:AT2G02010]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.