Factsheet for PGSC0003DMT400079706

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098240.2.1	Tomato	plastid	97.41	97.41
KRH09492	Soybean	cytosol	79.88	80.36
KRH38971	Soybean	cytosol	79.68	80.32
Zm00001d003531_P002	Maize	plastid	77.29	79.35
GSMUA_Achr8P22810_001	Banana	cytosol	74.7	79.11
CDX92158	Canola	cytosol	43.23	78.34
HORVU2Hr1G078560.1	Barley	plastid	75.5	77.98
EES12248	Sorghum	plastid	75.7	77.87
Os04t0447400-01	Rice	plasma membrane	74.5	77.27
TraesCS2D01G313500.1	Wheat	plastid	74.7	77.16
VIT_17s0000g00920.t01	Wine grape	cytosol	77.29	76.83
TraesCS2A01G315300.1	Wheat	plastid	74.3	76.75
GSMUA_Achr7P02370_001	Banana	cytosol	76.1	76.55
CDY46883	Canola	cytosol	72.51	75.36
PGSC0003DMT400034693	Potato	cytosol	75.3	75.3
PGSC0003DMT400058594	Potato	cytosol	74.5	75.25
AT3G17760.1	Thale cress	cytosol	73.51	74.7
CDY49834	Canola	cytosol	71.51	74.33
Bra022241.1-P	Field mustard	cytosol	72.51	74.29
Bra021272.1-P	Field mustard	cytosol	72.31	73.78
TraesCS2B01G333700.1	Wheat	plastid	74.5	72.9
AT3G17720.1	Thale cress	mitochondrion	26.69	69.07
PGSC0003DMT400006326	Potato	cytosol	18.73	65.73
CDX95824	Canola	cytosol	27.89	63.35
PGSC0003DMT400003251	Potato	cytosol	16.93	55.56
PGSC0003DMT400051021	Potato	plastid	19.32	17.77

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	EntrezGene:102581388	Gene3D:3.40.640.10
Gene3D:3.90.1150.160	MapMan:4.1.1.1.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488
GO:GO:0005575	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421
UniProt:M1D2B0	PFAM:PF00282	EnsemblPlantsGene:PGSC0003DMG400031042	PGSC:PGSC0003DMG400031042	EnsemblPlants:PGSC0003DMT400079706	PANTHER:PTHR43321
PANTHER:PTHR43321:SF8	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788
UniParc:UPI000295F38C	RefSeq:XP_006364390.1	SEG:seg	:	:	:

Description

Glutamate decarboxylase isoform1 [Source:PGSC_GENE;Acc:PGSC0003DMG400031042]

Coordinates

chr3:-:44921767..44925438

Molecular Weight (calculated)

56750.3 Da

IEP (calculated)

5.975

GRAVY (calculated)

-0.210

Length

502 amino acids

Sequence
(BLAST)

001: MVLTTTSIRE SEESLHCTFA SRYVQEPLPK FKIPKKSMPK EAAFQIVNDE LMLDGNPRLN LASFVSTWME PECDKLIMAS INKNYVDMDE YPVTTELQNR
101: CVNMLAHLFH APVGDDETAV GVGTVGSSEA IMLAGLAFKR KWQAKRKAEG KPFDKPNIVT GANVQVCWEK FARYFEVELK EVKLKEGYYV MDPAKAVEMV
201: DENTICVAAI LGSTLTGEFE DVKLLNELLT KKNKETGWDT PIHVDAASGG FIAPFLWPDL EWDFRLPLVK SINVSGHKYG LVYAGVGWVI WRSKEDLPDE
301: LVFHINYLGS DQPTFTLNFS KGSYQIIAQY YQLIRLGFEG YKDVMENCLA NTKVLTEGIT KMGRFDIVSK DVGVPVVAFS LRDSSKYTVF EVSEHLRRFG
401: WIVPAYTMPP DAEHIAVLRV VIREDFSHSL AERLVSDIEK ILTELDTQPS RLPTKAVRVT AEEVRNDKGD GLHQFHMDTV ETQKDIIKHW RKIAGKKTSG
501: VC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.