Factsheet for PGSC0003DMT400058594

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005000.2.1	Tomato	cytosol	93.36	95.87
PGSC0003DMT400003251	Potato	cytosol	26.96	87.58
CDY15807	Canola	cytosol	85.51	86.21
CDY09396	Canola	cytosol	85.31	86.0
Bra026621.1-P	Field mustard	cytosol	85.11	85.8
GSMUA_Achr8P30730_001	Banana	cytosol	81.69	85.65
Bra017429.1-P	Field mustard	cytosol	84.1	84.79
CDY04111	Canola	cytosol	84.1	84.79
CDY56295	Canola	cytosol	83.5	84.01
PGSC0003DMT400034693	Potato	cytosol	84.1	83.27
AT2G02000.1	Thale cress	cytosol	81.89	81.4
GSMUA_Achr4P31270_001	Banana	cytosol	79.68	80.98
PGSC0003DMT400006326	Potato	cytosol	22.74	79.02
AT2G02010.2	Thale cress	plastid	84.51	77.06
PGSC0003DMT400079706	Potato	cytosol	75.25	74.5
PGSC0003DMT400051021	Potato	plastid	18.91	17.22

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488
GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831
GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	UniProt:M1C2Y3	PFAM:PF00282
EnsemblPlantsGene:PGSC0003DMG400022764	PGSC:PGSC0003DMG400022764	EnsemblPlants:PGSC0003DMT400058594	PANTHER:PTHR43321	PANTHER:PTHR43321:SF2	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI0002959B06	SEG:seg

Description

Glutamate decarboxylase isoform3 [Source:PGSC_GENE;Acc:PGSC0003DMG400022764]

Coordinates

chr1:+:225084..229469

Molecular Weight (calculated)

56497.9 Da

IEP (calculated)

5.202

GRAVY (calculated)

-0.200

Length

497 amino acids

Sequence
(BLAST)

001: MVLSKTSSES DDSVHSTFAS RYVRTSLPRF EMPEKSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLMMASI NKNYVDMDEY PVTTELQNRC
101: VNIIARLFNA PLKEEETAIG VGTVGSSEAI MLAGLAFKRN WQNKCKAEGK PYDKPNIVTG ANVQVCWEKF ANYFEVELKE VKLSEGYYVM DPIKAVEMVD
201: ENTICVAAIL GSTLNGEFED VKLLHDLLIE KNKQTGWDTP IHVDAASGGF IAPFIYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RTKQDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGYEGY RNVMENCREN AIVLRKGLEK TGRFNIISKD EGIPLVAFSL KDNSLHNEFE VSETLRRFGW
401: IVPAYTMPAD VQHVTVLRVV IREDFSRTLA ERLVSDIVKV LHELDTLPAR LNAKMVEAEE NNLMINNNNV KKTEIEVQRA IADFWKKYVL ARKASVC

Best Arabidopsis Sequence Match ( AT2G02010.2 )
(BLAST)

001: MKRHILSTIY TICSSSSNST HSSSTTKQKH YYTFFPLVHF KPKNQSSKLK EDMVLSKTVS ESDVSIHSTF ASRYVRNSLP RFEMPENSIP KEAAYQIIND
101: ELMLDGNPRL NLASFVTTWM EPECDKLMME SINKNYVDMD EYPVTTELQN RCVNMIARLF NAPLGDGEAA VGVGTVGSSE AIMLAGLAFK RQWQNKRKAQ
201: GLPYDKPNIV TGANVQVCWE KFARYFEVEL KEVNLREDYY VMDPVKAVEM VDENTICVAA ILGSTLTGEF EDVKLLNDLL VEKNKQTGWD TPIHVDAASG
301: GFIAPFLYPE LEWDFRLPLV KSINVSGHKY GLVYAGIGWV VWRTKTDLPD ELIFHINYLG ADQPTFTLNF SKGSSQVIAQ YYQLIRLGFE GYRNVMDNCR
401: ENMMVLRQGL EKTGRFKIVS KENGVPLVAF SLKDSSRHNE FEVAHTLRRF GWIVPAYTMP ADAQHVTVLR VVIREDFSRT LAERLVADFE KVLHELDTLP
501: ARVHAKMANG KVNGVKKTPE ETQREVTAYW KKLLETKKTN KNTIC

Arabidopsis Description

GAD4glutamate decarboxylase 4 [Source:TAIR;Acc:AT2G02010]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.